YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375347, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375347, gi|....

Description	E-value	Query Range	Subject Range
SO2292 - ISSod4-16 transposase gi\|24373845, gi\|... - gi\|24373845\|ref\|NP_717888.1\| ISSod4, transposase [Shewanella oneidensis MR-1], gi\|24348249\|gb\|AAN553...	309.0	[0..1]	[400..1]
gi\|75234766, gi\|... - gi\|75234766\|ref\|ZP_00719076.1\| COG3328: Transposase and inactivated derivatives [Escherichia coli E1...	304.0	[0..8]	[397..11]
gi\|89102151 - gi\|89102151\|ref\|ZP_01174808.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis bio...	303.0	[0..4]	[398..9]
gi\|90309326, gi\|... - gi\|90309326\|gb\|ABD93710.1\| TnpA [Edwardsiella ictaluri], gi\|162404915\|gb\|ABX88888.1\| transposase [Ed...	303.0	[0..8]	[397..22]
gi\|31790976, gi\|... - gi\|31790976\|ref\|NP_857611.1\| hypothetical protein pEJ30_p02 [Erwinia sp. Ejp 556], gi\|31580582\|gb\|AA...	302.0	[0..4]	[398..3]
gi\|169749212, gi... - gi\|170022678\|ref\|YP_001719183.1\| transposase mutator type [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470668, gi... - gi\|167470668\|ref\|ZP_02335372.1\| IS285, transposase [Yersinia pestis FV-1], gi\|167470598\|ref\|ZP_02335... gi\|186895880, gi... - gi\|186897561\|ref\|YP_001874672.1\| transposase mutator type [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|162417845, gi... - gi\|77636509\|ref\|ZP_00798582.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis Ang... gi\|166012175, gi... - gi\|166012175\|ref\|ZP_02233073.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|165922804, gi... - gi\|165927708\|ref\|ZP_02223540.1\| IS285, transposase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|167051094, gi... - gi\|167402399\|ref\|ZP_02307862.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|25316080, gi\|... - pir\|\|T14710 probable transposase - Yersinia pestis plasmid pMT1, gi\|52788138\|ref\|YP_093966.1\| putat... gi\|166210624, gi... - gi\|166214486\|ref\|ZP_02240521.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|22125270, gi\|... - gi\|3883062\|gb\|AAC82722.1\| transposase [Yersinia pestis KIM], gi\|31795392\|ref\|NP_857845.1\| transposas... gi\|167424935, gi... - gi\|167427140\|ref\|ZP_02318893.1\| IS285, transposase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|45442348, gi\|... - gi\|45478710\|ref\|NP_995566.1\| transposase [Yersinia pestis biovar Microtus str. 91001], gi\|45443233\|r... gi\|166963203, gi... - gi\|167422595\|ref\|ZP_02314348.1\| IS285, transposase [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|51595054, gi\|... - gi\|51597611\|ref\|YP_071802.1\| putative transposase [Yersinia pseudotuberculosis IP 32953], gi\|5159642... gi\|108812968, gi... - gi\|229904765\|ref\|ZP_04519875.1\| putative transposase [Yersinia pestis Nepal516], gi\|229903402\|ref\|ZP... gi\|16121857, gi\|... - gi\|5834763\|emb\|CAB55262.1\| putative transposase [Yersinia pestis CO92], gi\|218930876\|ref\|YP_00234875... gi\|165939665, gi... - gi\|89105765\|ref\|ZP_01178279.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis bio... gi\|108808523, gi... - gi\|108808536\|ref\|YP_652452.1\| transposase for the IS285 insertion element [Yersinia pestis Antiqua],... gi\|229895445, gi... - gi\|229896446\|ref\|ZP_04511614.1\| putative transposase [Yersinia pestis Pestoides A], gi\|229895895\|ref... Q66FZ8\|Q66FZ8_YERPS - Putative transposase for IS285 insertion element - Yersinia pseudotuberculosis gi\|229838371, gi... - gi\|229897806\|ref\|ZP_04512961.1\| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|149292494, gi... - gi\|153997071\|ref\|ZP_02022204.1\| transposase for the IS285 insertion element [Yersinia pestis CA88-41... gi\|229843584, gi... - gi\|229900365\|ref\|ZP_04515499.1\| putative transposase [Yersinia pestis biovar Orientalis str. India 1... gi\|145211022, gi... - gi\|145600358\|ref\|YP_001164434.1\| transposase for the IS285 insertion element [Yersinia pestis Pestoi...	302.0	[0..4]	[398..3]
gi\|91793412, gi\|... - gi\|91793412\|ref\|YP_563063.1\| transposase, mutator type [Shewanella denitrificans OS217], gi\|91715414...	302.0	[0..1]	[400..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPFNFEQA LKDLQSGKSL TGKDSILGPL IKQLTEAALQ AELEQHLAHD PQPNRKNGKT  60
   61 PKTIKHPSGN FELDAPRDRN GTFEPQLIKK NQTTLTDEIE RKVLSMFSIG MSYRDINQHV 120
  121 EDMYGLNVSN ATVSAITDKL IPELKAWQQR PLDSHYPIVW LDAIHYKVKE DGRYVSKAVY 180
  181 TLLALNMKGK KEILGLHLSE NEGANYWLSV LTDLNNRGVK DILIACVDGL TGFPEAIASI 240
  241 FPH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [244-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TETQLCVIHQ IRNSMKYVAS KNQKAFMADL KPVYRAVSKE AAEMALDELE AKWGDAYPLV  60
   61 INSWRRKWHN LSHYFKYPEH IRKVIYTTNA VEAVHRQFRK LTKTKGAFPN ENSLLKLLYA 120
  121 GILNASDKWT MPIHNWSLCL SQLAIYFEGR LDSVLEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	0.268	transposase activity	a.1.1	Globin-like
View	Download	0.555	0.090	transposase activity	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.682	0.016	transposase activity	a.29.2	Bromodomain
View	Download	0.543	0.008	transposase activity	a.79.1	Antitermination factor NusB
View	Download	0.611	N/A	N/A	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits