YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376341, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376341, gi|....

Description	E-value	Query Range	Subject Range
SO9008 - ISSod4a transposase (SO0378,SO0596,SO1269,SO1438,SO1616,SO1875,SO2078,SO2272,SO2321,SO2344,SO2392,SO... gi\|24375347, gi\|... - gi\|24376352\|ref\|NP_720460.1\| ISSod4, transposase [Shewanella oneidensis MR-1], gi\|24376307\|ref\|NP_72...	312.0	[0..1]	[400..1]
gi\|47174902 - gi\|47174902\|gb\|AAT12436.1\| TnpA [Salmonella enterica]	311.0	[0..7]	[397..10]
gi\|75234766, gi\|... - gi\|75234766\|ref\|ZP_00719076.1\| COG3328: Transposase and inactivated derivatives [Escherichia coli E1...	311.0	[0..7]	[397..10]
gi\|88916947, gi\|... - gi\|88938196\|ref\|ZP_01143688.1\| transposase, mutator family [Geobacter uraniumreducens Rf4], gi\|88938...	310.0	[0..1]	[397..1]
gi\|10567527 - gi\|10567527\|gb\|AAG18473.1\|AF143819_2 transposase-like protein; TnpA [Escherichia coli]	310.0	[0..7]	[397..10]
gi\|90309326, gi\|... - gi\|90309326\|gb\|ABD93710.1\| TnpA [Edwardsiella ictaluri], gi\|162404915\|gb\|ABX88888.1\| transposase [Ed...	308.0	[0..7]	[397..21]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPFNFEQA LKDLQSGKSL TGKDSILGPL IKQLTEAALQ AELEQHLAHD PQPNRKNGKT  60
   61 PKTIKHPSGN FELDAPRDRN GTFEPQLIKK NQTTLTDEIE RKVLSMFSIG MSYRDINQHV 120
  121 EDMYGLNVSN ATVSAITDKL IPELKAWQQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDSHYPIVW LDAIHYKVKE DGRYVSKAVY TLLALNMEGK KDILGLHLSE NEGANYWLSV  60
   61 LTDLNHRGVK DILIACVDGL TGFPEAIASI FPHTETQLCV IHQIRNSMKY VASKNQKAFM 120
  121 ADLKPVYRAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.844	N/A	N/A	c.26.2	Adenine nucleotide alpha hydrolases-like

Predicted Domain #3

Region A:
Residues: [281-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKEAAEMALD ELEAKWGDAY PLVINSWRRK WHNLSHYFKY PEHIRKVIYT TNAVEAVHRQ  60
   61 FRKLTKTKGA FPNENSLLKL LYAGILNASD KWTMPIHNWS LCLSQLAIYF EGRLDSVLEI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.823	N/A	N/A	a.130.1	Chorismate mutase II

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits