YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376316, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376316, gi|....

Description	E-value	Query Range	Subject Range
gi\|113948448, gi... - gi\|160872957\|ref\|YP_001556964.1\| ParB family protein [Shewanella baltica OS195], gi\|160858479\|gb\|ABX...	207.0	[0..1]	[364..1]
gi\|54019148, gi\|... - gi\|54027640\|ref\|YP_121882.1\| putative chromosome partitioning protein [Nocardia farcinica IFM 10152]...	196.0	[0..2]	[346..4]
gi\|15828464 - gi\|15828464\|ref\|NP_302727.1\| putative cell division protein [Mycobacterium leprae TN] gi\|13093894, gi\|... - gi\|25400492\|pir\|\|H87247 probable cell division protein [imported] - Mycobacterium leprae, gi\|1309389... gi\|221230941, gi... - gi\|221230941\|ref\|YP_002504357.1\| putative cell division protein [Mycobacterium leprae Br4923], gi\|21...	196.0	[0..27]	[349..18]
PARB_MYCLE - Probable chromosome-partitioning protein parB OS=Mycobacterium leprae GN=parB PE=3 SV=1 PARB_MYCLE - Probable chromosome-partitioning protein ParB OS=Mycobacterium leprae (strain TN) GN=parB PE=3 SV=1	195.0	[0..27]	[349..16]
gi\|23494786, gi\|... - gi\|25029497\|ref\|NP_739551.1\| putative chromosome partitioning protein ParB [Corynebacterium efficien...	191.0	[0..2]	[351..54]
gi\|56422024, gi\|... - gi\|56422024\|ref\|YP_149342.1\| stage 0 sporulation protein J (antagonist of Soj) [Geobacillus kaustoph... gi\|220708988, gi... - gi\|221086935\|ref\|ZP_03556475.1\| parB-like partition protein [Geobacillus sp. Y412MC61], gi\|220708988... gi\|229497924, gi... - gi\|229497924\|ref\|ZP_04391623.1\| parB-like partition protein [Geobacillus sp. Y412MC52], gi\|229331350...	191.0	[0..57]	[349..2]
gi\|57472465 - gi\|57472465\|gb\|AAW51292.1\| putative partitioning protein B [Vibrio cholerae]	187.0	[0..1]	[357..1]
gi\|90202214, gi\|... - gi\|90202214\|ref\|ZP_01204860.1\| ParB-like partition protein [Mycobacterium vanbaalenii PYR-1], gi\|901...	186.0	[0..43]	[349..20]
PARB_MYCTO - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshko... PARB_MYCTU - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37... gi\|134151965, gi... - gi\|254366453\|ref\|ZP_04982497.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis str... gi\|167969455, gi... - gi\|167969455\|ref\|ZP_02551732.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis H37... gi\|224992323, gi... - gi\|224992323\|ref\|YP_002647013.1\| putative chromosome partitioning protein [Mycobacterium bovis BCG s... PARB_MYCBO - Probable chromosome-partitioning protein ParB OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/9... PARB_MYCBO - Probable chromosome-partitioning protein parB OS=Mycobacterium bovis GN=parB PE=3 SV=1 gi\|215425179 - gi\|215425179\|ref\|ZP_03423098.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis T92... gi\|215432898 - gi\|215432898\|ref\|ZP_03430817.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis EAS... gi\|215448264 - gi\|215448264\|ref\|ZP_03435016.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis T85... gi\|218755709 - gi\|218755709\|ref\|ZP_03534505.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis GM ... gi\|253322471, gi... - gi\|253800967\|ref\|YP_003033969.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis KZ... gi\|215405975 - gi\|215405975\|ref\|ZP_03418156.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis 02_... gi\|215413845 - gi\|215413845\|ref\|ZP_03422510.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis 94_... gi\|255094772 - gi\|255094772\|ref\|ZP_05324250.1\| putative chromosome partitioning protein [Mycobacterium tuberculosis... gi\|254548921 - gi\|254548921\|ref\|ZP_05139368.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis '98... PARB_MYCTU - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis GN=parB PE=3 SV=1 gi\|254817848 - gi\|254817848\|ref\|ZP_05222849.1\| putative chromosome partitioning protein [Mycobacterium tuberculosis... gi\|121639828, gi... - gi\|121639828\|ref\|YP_980052.1\| putative chromosome partitioning protein parB [Mycobacterium bovis BCG... gi\|194542450, gi... - gi\|254233399\|ref\|ZP_04926725.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis C],... gi\|148825125, gi... - gi\|148825125\|ref\|YP_001289879.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis F1...	185.0	[0..37]	[346..16]
gi\|118464564, gi... - gi\|118464564\|ref\|YP_884416.1\| ParB-like partition proteins [Mycobacterium avium 104], gi\|118165851\|g... gi\|41399275, gi\|... - gi\|41410441\|ref\|NP_963277.1\| hypothetical protein MAP4343c [Mycobacterium avium subsp. paratuberculo... gi\|254777654 - gi\|254777654\|ref\|ZP_05219170.1\| ParB-like partition proteins [Mycobacterium avium subsp. avium ATCC ...	185.0	[0..46]	[349..24]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKRGAMSP LGNAVGAEEA QKNAAKANIE SLKRQITTEI QKVSDDVTLS LKNLFGLESV  60
   61 GNSFLWQLAS GATATFTEAT LSYEQVRDST YVTFDVNGRD QALLNADSLQ DLDSLAFQQF 120
  121 YPAVAREVNG KLDVLDGSRR RAWFLLQNGK VDIFRILVTK DDISLSDAKA LAKQLQTAKE 180
  181 HNLREIGQQC LSLEKANPKI TQAEVAAQLG MSQAGVSKAL KAAKVDERLV KLFPVASDLS 240
  241 HTDYALLNKV MEVYEFEDEL IEFINDLTQK IVIIQVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1vz0A
Description:	Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.181916023117098	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [278-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSRAERKSAI IKAMKSELQI AKDMKSKALV SVTNLATFDS SGIYARKRIK GRNFAYEFGR  60
   61 LSLDIQKQLD IAIVDVLKKN KFNTTVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1zx4A
Description:	Structure of ParB bound to DNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: