YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345209, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345209, gi|....

Description	E-value	Query Range	Subject Range
gi\|113909080, gi... - gi\|160872956\|ref\|YP_001556963.1\| cobyrinic acid ac-diamide synthase [Shewanella baltica OS195], gi\|1... gi\|151367562, gi... - gi\|152998548\|ref\|YP_001355469.1\| cobyrinic acid ac-diamide synthase [Shewanella baltica OS185], gi\|1...	238.0	[0..1]	[399..1]
gi\|77390259, gi\|... - gi\|77404609\|ref\|YP_345183.1\| ATPase, ParA type [Rhodobacter sphaeroides 2.4.1], gi\|77390259\|gb\|ABA81...	238.0	[0..8]	[395..6]
gi\|91802512, gi\|... - gi\|92109430\|ref\|YP_571718.1\| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14], gi\|...	234.0	[0..9]	[395..23]
gi\|84502396, gi\|... - gi\|84502396\|ref\|ZP_01000532.1\| ATPase, ParA type [Oceanicola batsensis HTCC2597], gi\|84389208\|gb\|EAQ...	233.0	[0..9]	[395..12]
gi\|89046024, gi\|... - gi\|89068370\|ref\|ZP_01155773.1\| ATPase, ParA type [Oceanicola granulosus HTCC2516], gi\|89046024\|gb\|EA...	233.0	[0..4]	[395..2]
gi\|22023152 - gi\|22023152\|gb\|AAM88941.1\|AF313446_2 RepA [Rhizobium etli] gi\|86284144, gi\|... - gi\|86360042\|ref\|YP_471932.1\| plasmid partitioning protein RepAb [Rhizobium etli CFN 42], gi\|86284144...	233.0	[0..9]	[396..18]
gi\|57472466 - gi\|57472466\|gb\|AAW51293.1\| partitioning protein A [Vibrio cholerae]	232.0	[0..1]	[399..1]
gi\|69279346, gi\|... - gi\|69279346\|ref\|ZP_00614260.1\| Cobyrinic acid a,c-diamide synthase [Mesorhizobium sp. BNC1], gi\|6819...	229.0	[0..9]	[395..21]
gi\|17742365, gi\|... - gi\|17937627\|ref\|NP_534416.1\| replication protein A [Agrobacterium tumefaciens str. C58], gi\|17742365... gi\|25301483 - pir\|\|AF3039 replication protein A [imported] - Agrobacterium tumefaciens (strain C58, Dupont)	228.0	[0..9]	[395..20]
gi\|115259559, gi... - gi\|116254911\|ref\|YP_770746.1\| putative replication protein A [Rhizobium leguminosarum bv. viciae 384...	227.0	[0..10]	[395..20]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSMQTTETF QVLKIGADAY IKRRNQRLLS NHRKDLRKFT RAEAFTYLDI DAKTLDKYVA  60
   61 TADFDPRRHE DSQWLINIEE MYQLRDLLPE NLRKASKFKR SDNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.448	a.7.12	Description not found.
View	Download	0.377	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.365	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.336	a.11.2	Second domain of FERM
View	Download	0.335	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.321	a.112.1	Description not found.
View	Download	0.305	b.34.9	Tudor/PWWP/MBT
View	Download	0.292	a.158.1	F-box domain

Predicted Domain #2

Region A:
Residues: [105-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMQVIVIQNQ KGGVGKTVSA ATIASGLATE FHQEYRVGLI DMDGQATLSM YYAPEADLEG  60
   61 CLSVGDLMMN NFDLDEGETL EQVVSNAFLP TTIPNLRILP ASQSDRAIEG WFHEQVFGQK 120
  121 LTSPYSLLNT IINAVQDEFD IIIIDTPPSL GYATYNAYFA ATSVVFPLSI TENDIDATCS 180
  181 YFSYIPQVWA LLANANHRGY DFMKILITNH RDSATTTDLM NTLYDHFAPY MYSNEFKHSE 240
  241 AIRQSSSLLS TVFDMSKSEY PKSKATFQSA QQNCYEVTSQ VLRDIVNVWR EQEQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits