YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376289, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376289, gi|....

Description	E-value	Query Range	Subject Range
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	160.0	[0..2]	[224..3]
gi\|60593886, gi\|... - gi\|60594421\|pdb\|2BEJ\|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein Soj, gi\|60...	160.0	[0..2]	[225..7]
SOJ_THET2 - Chromosome-partitioning ATPase Soj OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) G...	159.0	[0..2]	[225..7]
gi\|55981939, gi\|... - gi\|55981939\|ref\|YP_145236.1\| ParA family chromosome partitioning ATPase [Thermus thermophilus HB8], ...	159.0	[0..2]	[225..7]
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	158.0	[0..2]	[225..3]
gi\|71909714, gi\|... - gi\|71909714\|ref\|YP_287301.1\| chromosome segregation ATPase [Dechloromonas aromatica RCB], gi\|7184933...	157.0	[0..1]	[222..1]
gi\|51858156, gi\|... - gi\|51894467\|ref\|YP_077158.1\| ParA family ATPase [Symbiobacterium thermophilum IAM 14863], gi\|5185815...	156.0	[0..2]	[225..3]
gi\|34496118, gi\|... - gi\|34496118\|ref\|NP_900333.1\| ParA family chromosome partitioning ATPase [Chromobacterium violaceum A...	156.0	[0..2]	[225..4]
gi\|49235569, gi\|... - gi\|83591332\|ref\|YP_431341.1\| chromosome segregation ATPase [Moorella thermoacetica ATCC 39073], gi\|8...	156.0	[0..2]	[220..3]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIAFAQSK GGAGKTTACV TLAGELCRQA SESGIQITLI DTDPNQHSAG WAKKKGCPSN  60
   61 LILIEKSTED TVLDDIETAS SQTQFVLVDL EGTANFAVTQ AISRADLVIV PCQGSEDDAT 120
  121 EAARTIGLIR KQGRLLARKI PCCILLTRTS AAIQTRLLKL IKQDFLDSGV HILNSSLIDR 180
  181 EAFRAVRSYG GTVNNLDPAL VSGIDKAASN AKAYANDVKR MLLEANNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits