YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376244, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376244, gi|....

Description	E-value	Query Range	Subject Range
gi\|194687002 - gi\|194687002\|dbj\|BAG66137.1\| UV repair protein, RumA [Vibrio cholerae O1 biovar El tor] gi\|126521031, gi... - gi\|229509132\|ref\|ZP_04398619.1\| error-prone repair protein UmuD [Vibrio cholerae B33], gi\|229353889\|... gi\|229371459, gi... - gi\|229608804\|ref\|YP_002879452.1\| error-prone repair protein UmuD [Vibrio cholerae MJ-1236], gi\|22937... gi\|238815147 - gi\|238815147\|gb\|ACR56736.1\| UV repair protein [Escherichia coli] gi\|21885340, gi\|... - gi\|32469330\|dbj\|BAC79073.1\| UV repair [Vibrio cholerae], gi\|21885340\|gb\|AAL59746.1\| UV repair [Vibri... gi\|75831603, gi\|... - gi\|75831603\|ref\|ZP_00760865.1\| COG1974: SOS-response transcriptional repressors (RecA-mediated autop...	160.0	[0..3]	[130..21]
gi\|56684975, gi\|... - gi\|56750016\|ref\|YP_170717.1\| DNA polymerase V [Synechococcus elongatus PCC 6301], gi\|56684975\|dbj\|BA... gi\|46129952, gi\|... - gi\|81300358\|ref\|YP_400566.1\| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942], gi\|811...	160.0	[0..4]	[124..62]
gi\|82741044, gi\|... - gi\|82741044\|ref\|ZP_00903774.1\| mutagenesis and repair protein [Shewanella sp. W3-18-1], gi\|82721619\|...	160.0	[0..3]	[130..21]
gi\|77543205 - gi\|77543205\|gb\|ABA87017.1\| RumA [Vibrio cholerae]	160.0	[0..3]	[130..21]
gi\|862632 - gi\|862632\|gb\|AAC45831.1\| RumA(R391) [IncJ plasmid R391] gi\|1096690 - gi\|1096690\|prf\|\|2112258A rumA gene gi\|19571780, gi\|... - gi\|20095189\|gb\|AAM08055.1\| RumA [Providencia rettgeri], gi\|19571780\|emb\|CAD27658.1\| RumA protein [Pr...	159.0	[0..3]	[130..21]
gi\|117925395, gi... - gi\|69259874\|ref\|ZP_00607747.1\| Repressor lexA [Magnetococcus sp. MC-1], gi\|68245717\|gb\|EAN27832.1\| R...	157.0	[0..4]	[125..112]
gi\|34497787, gi\|... - gi\|34497787\|ref\|NP_902002.1\| SOS mutagenesis [Chromobacterium violaceum ATCC 12472], gi\|34103643\|gb\|...	156.0	[0..3]	[125..72]
gi\|88787432, gi\|... - gi\|88808444\|ref\|ZP_01123954.1\| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805], gi...	156.0	[0..4]	[125..23]
gi\|33632747, gi\|... - gi\|33865578\|ref\|NP_897137.1\| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102], gi\|3...	155.0	[0..3]	[125..18]
gi\|93456296, gi\|... - gi\|94263341\|ref\|ZP_01287156.1\| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1], gi\|93456...	154.0	[0..5]	[125..22]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVIPIPAQA GITGFESPAA EYTQLGLSLD ELLIIHPSAS FLCVAQGDSM QGVGIYDGDV  60
   61 LIVDRHETAR NGDVIVANFN GLFVCKIIDT QRRLLLSCNE QFQPVTVQEF DDFSIEGVVI 120
  121 RSIRCHRPSS LLCA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1umuA
Description:	UmuD'
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.131345342552043	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: