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View Structure Prediction Details

Protein: CLASP_ARATH
Organism: Arabidopsis thaliana
Length: 1439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CLASP_ARATH.

Predicted Domain #1
Region A:
Residues: [1-1159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEALEMARA KDTKERMAAV ERLHQLLEAS RKSLSPAEVT SLVDSCLDLL KDSNFRVSQG  60
   61 ALQALASAAV LAGEHLKLHL NALVPAVVER LGDSKQPVRD AARRLLTTLM EVSSPTIIVE 120
  121 RAGSYAWMHK SWRVREEFAR TVTSAIGLFA STELPLQRVI LAPILQMLND PNQAVREAAI 180
  181 LCIEEMYMQG GSQFREELQR HHLPSYMVKD INARLERIEP QLRSTDGRSA HHVVNEVKAS 240
  241 SVNPKKSSPR AKAPTRENSL FGGDADITEK PIEPIKVYSE KELIREFEKI AATLVPEKDW 300
  301 SMRISAMRRV EGLVAGGATD YSCFRGLLKQ LVGPLSTQLA DRRSTIVKQA CHLLCLLSKE 360
  361 LLGDFEACAE TFIPVLFKLV VITVLVIAES ADNCIKTMLR NCKAARVLPR IAESAKHDRN 420
  421 AILRARCCEY ALLTLEHWPD APEIQRSVDL YEDLIRCCVA DAMSEVRATA RMCYRMFAKT 480
  481 WPDRSRRLFS SFDPVIQRLI NEEDGGIHRR HASPSVRERH SQPSFSQTSA PSNLPGYGTS 540
  541 AIVAMDRSSN LSSGGSLSSG LLLSQSKDVN KGSERSLESV LQSSKQKVSA IESMLRGLHI 600
  601 SDRQNPAALR SSSLDLGVDP PSSRDPPFHA VAPASNSHTS SAAAESTHSI NKGSNRNGGL 660
  661 GLSDIITQIQ ASKDSGRSSY RGNLLSESHP TFSSLTAKRG SERNERSSLE ESNDAREVRR 720
  721 FMAGHFDRQQ MDTAYRDLTF RESNASHVPN FQRPLLRKNV GGRMSAGRRR SFDDSQLQIG 780
  781 DISNFVDGPA SLNEALNDGL NSSSDWCARV AAFNFLQTLL QQGPKGAQEV IQSFEKVMKL 840
  841 FLRHLDDPHH KVAQAALSTL ADLIPSCRKP FESYMERVLP HVFSRLIDPK EVVRQPCSST 900
  901 LEIVSKTYSV DSLLPALLRS LDEQRSPKAK LAVIEFAINS FNRYAGNPEI SGNSGILKLW 960
  961 LAKLTPLTRD KNTKLKEASI TCIISVYNHY DSAGLLNYIL SLSVEEQNSL RRALKQYTPR1020
 1021 IEVDLLNYMQ SKKEKQRIKS YDPSDAIGTS SEEGYAGASK KNIFLGRYSG GSIDSDSGRK1080
 1081 WSSSQEPTMI TGGVGQNVSS GTQEKLYQNV RTGISSASDL LNPKDSDYTF ASAGQNSISR1140
 1141 TSPNGSSENI EILDDLSPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.522879
Match: 1u6gC
Description: Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [1160-1439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLEKNGLNLT SVDSLEGRHE NEVSRELDLG HYMLTSIKVN TTPESGPSIP QILHMINGSD  60
   61 GSPSSSKKSG LQQLIEASVA NEESVWTKYF NQILTVVLEV LDDEDFSIKE LALSLISEML 120
  121 KSQKDAMEDS VEIVIEKLLH VSKDTVPKVS TEAEQCLTTV LSQYDPFRCL SVIVPLLVTE 180
  181 DEKTLVACIN CLTKLVGRLS QEELMDQLSS FLPAVFEAFG SQSADVRKTV VFCLVDIYIM 240
  241 LGKAFLPYLE GLNSTQVRLV TIYANRISQA RNGAPIDADT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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