YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ATPD_SHEON
Organism: Shewanella oneidensis MR-1
Length: 177 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_SHEON.

Description E-value Query
Range
Subject
Range
gi|91226235, gi|... - gi|91226235|ref|ZP_01261075.1| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi|9118...
195.0 [0..1] [177..1]
ATPD_VIBAL - ATP synthase subunit delta OS=Vibrio alginolyticus GN=atpH PE=3 SV=1
gi|116185028, gi... - gi|75855547|ref|ZP_00763195.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
195.0 [0..1] [177..1]
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpH P...
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus GN=atpH PE=3 SV=1
194.0 [0..1] [177..1]
gi|37681438, gi|... - gi|37681438|ref|NP_936047.1| ATP synthase subunit D [Vibrio vulnificus YJ016], gi|37200190|dbj|BAC96...
194.0 [0..1] [177..5]
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus GN=atpH PE=3 SV=1
ATPD_VIBVY - ATP synthase subunit delta OS=Vibrio vulnificus (strain YJ016) GN=atpH PE=3 SV=2
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus (strain CMCP6) GN=atpH PE=3 SV=1
192.0 [0..1] [177..1]
gi|77961819, gi|... - gi|77961819|ref|ZP_00825649.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
192.0 [0..1] [177..1]
ATPD_SALCH - ATP synthase subunit delta OS=Salmonella choleraesuis (strain SC-B67) GN=atpH PE=3 SV=1
ATPD_SALPA - ATP synthase subunit delta OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpH PE=3 SV=1
gi|238913121 - gi|238913121|ref|ZP_04656958.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
ATPD_SALTY - ATP synthase subunit delta OS=Salmonella typhimurium GN=atpH PE=3 SV=1
ATPD_SALCH - ATP synthase subunit delta OS=Salmonella choleraesuis GN=atpH PE=3 SV=1
ATPD_SALPA - ATP synthase subunit delta OS=Salmonella paratyphi A GN=atpH PE=3 SV=1
ATPD_SALNS - ATP synthase subunit delta OS=Salmonella newport (strain SL254) GN=atpH PE=3 SV=1
ATPD_SALHS - ATP synthase subunit delta OS=Salmonella heidelberg (strain SL476) GN=atpH PE=3 SV=1
gi|194455363, gi... - gi|194468999|ref|ZP_03074983.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ...
ATPD_SALSV - ATP synthase subunit delta OS=Salmonella schwarzengrund (strain CVM19633) GN=atpH PE=3 SV=1
gi|205335973, gi... - gi|205335973|gb|EDZ22737.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|205348120, gi... - gi|205348120|gb|EDZ34751.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|168464797, gi... - gi|195632282|gb|EDX50766.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|205340513, gi... - gi|205340513|gb|EDZ27277.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
ATPD_SALPB - ATP synthase subunit delta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpH PE=3 SV=1
gi|205327319, gi... - gi|205327319|gb|EDZ14083.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|168234376, gi... - gi|205331673|gb|EDZ18437.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|168239812, gi... - gi|197287554|gb|EDY26947.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero...
gi|213649861 - gi|213649861|ref|ZP_03379914.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|213852795 - gi|213852795|ref|ZP_03382327.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|214001327 - gi|214001327|ref|ZP_03412062.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
ATPD_SALPC - ATP synthase subunit delta OS=Salmonella paratyphi C (strain RKS4594) GN=atpH PE=3 SV=1
gi|213028744 - gi|213028744|ref|ZP_03343191.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|213052667 - gi|213052667|ref|ZP_03345545.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|213427467 - gi|213427467|ref|ZP_03360217.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|213609336 - gi|213609336|ref|ZP_03369162.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica...
gi|199604774, gi... - gi|200387676|ref|ZP_03214288.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ...
gi|204928690, gi... - gi|204928690|ref|ZP_03219889.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ...
ATPD_SALG2 - ATP synthase subunit delta OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=atpH PE=3 SV=1
ATPD_SALEP - ATP synthase subunit delta OS=Salmonella enteritidis PT4 (strain P125109) GN=atpH PE=3 SV=1
ATPD_SALA4 - ATP synthase subunit delta OS=Salmonella agona (strain SL483) GN=atpH PE=3 SV=1
gi|197262699, gi... - gi|197262699|ref|ZP_03162773.1| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ...
ATPD_SALPK - ATP synthase subunit delta OS=Salmonella paratyphi A (strain AKU_12601) GN=atpH PE=3 SV=1
ATPD_SALDC - ATP synthase subunit delta OS=Salmonella dublin (strain CT_02021853) GN=atpH PE=3 SV=1
ATPD_SALPB - ATP synthase subunit delta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpH PE=3 SV=1
lcl|NC_016856.1_... - [gene=atpH] [protein=F0F1 ATP synthase subunit delta] [protein_id=YP_005240136.1] [location=compleme...
gi|29139582, gi|... - gi|29143946|ref|NP_807288.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica se...
gi|16762458 - gi|16762458|ref|NP_458075.1| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica se...
ATPD_SALTI - ATP synthase subunit delta OS=Salmonella typhi GN=atpH PE=3 SV=1
ATPD_SALTY - ATP synthase subunit delta OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpH P...
191.0 [0..1] [177..1]
gi|238783019, gi... - gi|77958189|ref|ZP_00822227.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
190.0 [0..1] [177..1]
gi|77973803, gi|... - gi|77973803|ref|ZP_00829348.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
190.0 [0..1] [177..1]
gi|238727472, gi... - gi|77977933|ref|ZP_00833370.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
190.0 [0..1] [177..1]

Back

Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELTTIARP YAKAAFDIAV EHNAVDNWAE MLTFAALVSE NETMKPLLTG SLASTKLAAL  60
   61 FISVCGEQIN EQGQNLIKVM AENGRLKVLP AVSELFAQYR NEWAKEVEAD VVSAAELSSE 120
  121 QQQQISISLE KRLARKVKLN CSTDAALIAG VIIKAGDLVI DGSVRGKLSR LSEKLQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1abvA
Description: N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 14.7422820889757 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 12.9278793563887 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 11.1783751674743 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 10.0680074813957 bayes_pls_golite062009
cation transmembrane transporter activity 6.33234611151135 bayes_pls_golite062009
ion transmembrane transporter activity 6.2273693570543 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.80354336411519 bayes_pls_golite062009
transporter activity 4.02094516916098 bayes_pls_golite062009
substrate-specific transporter activity 3.93981768923161 bayes_pls_golite062009
transmembrane transporter activity 3.93135059223129 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle