YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPA_SHEON.

Description	E-value	Query Range	Subject Range
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	671.0	[0..1]	[512..1]
ATPA_CUPMC - ATP synthase subunit alpha OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 ...	660.0	[0..1]	[513..1]
gi\|33329385, gi\|... - gi\|33329385\|gb\|AAQ10088.1\| ATP synthase subunit alpha [Bacillus sp. TA2.A1], gi\|158430152\|pdb\|2QE7\|C...	660.0	[0..1]	[512..1]
ATPA1_NITMU - ATP synthase subunit alpha 1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=atpA1 ...	659.0	[0..1]	[513..1]
ATPA_MOOTA - ATP synthase subunit alpha OS=Moorella thermoacetica (strain ATCC 39073) GN=atpA PE=1 SV=1	658.0	[0..1]	[512..1]
ATPA_AROAE - ATP synthase subunit alpha OS=Aromatoleum aromaticum (strain EbN1) GN=atpA PE=3 SV=1	655.0	[0..1]	[512..1]
ATPA_HALOH - ATP synthase subunit alpha OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpA PE=...	655.0	[0..1]	[512..1]
ATPA_DESRM - ATP synthase subunit alpha OS=Desulfotomaculum reducens (strain MI-1) GN=atpA PE=3 SV=1	654.0	[0..1]	[512..1]
gi\|75818734, gi\|... - gi\|75818734\|ref\|ZP_00748862.1\| COG0056: F0F1-type ATP synthase, alpha subunit [Vibrio cholerae V51],... gi\|227082878, gi... - gi\|227082878\|ref\|YP_002811429.1\| ATP synthase F1, alpha subunit [Vibrio cholerae M66-2], gi\|22701076... gi\|15642759, gi\|... - gi\|9657367\|gb\|AAF95905.1\| ATP synthase F1, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11266615 - gi\|11266615\|pir\|\|H82036 ATP synthase F1, alpha chain VC2766 [imported] - Vibrio cholerae (strain N16... gi\|121628658, gi... - gi\|121729377\|ref\|ZP_01682044.1\| ATP synthase F1, alpha subunit [Vibrio cholerae V52], gi\|121628658\|g... gi\|254851557, gi... - gi\|254851557\|ref\|ZP_05240907.1\| ATP synthase F1 [Vibrio cholerae MO10], gi\|254847262\|gb\|EET25676.1\| ... gi\|229369208, gi... - gi\|229606553\|ref\|YP_002877201.1\| ATP synthase alpha chain [Vibrio cholerae MJ-1236], gi\|229369208\|gb... gi\|229332355, gi... - gi\|229530222\|ref\|ZP_04419611.1\| ATP synthase alpha chain [Vibrio cholerae 12129(1)], gi\|229332355\|gb... gi\|229524895, gi... - gi\|229524895\|ref\|ZP_04414300.1\| ATP synthase alpha chain [Vibrio cholerae bv. albensis VL426], gi\|22... gi\|229520155, gi... - gi\|229520155\|ref\|ZP_04409582.1\| ATP synthase alpha chain [Vibrio cholerae TM 11079-80], gi\|229342749... gi\|229517153, gi... - gi\|229517153\|ref\|ZP_04406599.1\| ATP synthase alpha chain [Vibrio cholerae RC9], gi\|229346216\|gb\|EEO1... gi\|229515967, gi... - gi\|229515967\|ref\|ZP_04405424.1\| ATP synthase alpha chain [Vibrio cholerae TMA 21], gi\|229347067\|gb\|E... gi\|229508631, gi... - gi\|229508631\|ref\|ZP_04398126.1\| ATP synthase alpha chain [Vibrio cholerae B33], gi\|229354345\|gb\|EEO1... gi\|153827191, gi... - gi\|153827191\|ref\|ZP_01979858.1\| ATP synthase F1, alpha subunit [Vibrio cholerae MZO-2], gi\|149738914... gi\|229354552, gi... - gi\|229508279\|ref\|ZP_04397783.1\| ATP synthase alpha chain [Vibrio cholerae BX 330286], gi\|229354552\|g... gi\|227012006, gi... - gi\|227116556\|ref\|YP_002818452.1\| ATP synthase F1, alpha subunit [Vibrio cholerae O395], gi\|227012006... gi\|254291146, gi... - gi\|254291146\|ref\|ZP_04961943.1\| ATP synthase F1, alpha subunit [Vibrio cholerae AM-19226], gi\|197751...	653.0	[0..1]	[513..11]
ATPA_ALKOO - ATP synthase subunit alpha OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpA PE=3 SV=1	653.0	[0..1]	[511..1]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLNSTEISD LIKQRIEQFE VVSESRNEGT IVAVSDGIIR IHGLADVMQG EMIELPGSRF  60
   61 AIALNLERDS VGAVVMGPYA DLAEGVKVKT TGRILEVPVG RGLLGRVVNT LGEPIDGKGA 120
  121 IDNDGFSPVE VIAPGVIERK SVDQPVQTGY KAVDAMIPIG RGQRELIIGD RQTGKTAMAI 180
  181 DAIINQRDSG IKCVYVAVGQ KASTIANVVR KLEEHGALAN TIVVVATASE AAALQYLAPY 240
  241 SGCAMGEYFR DRGEDALIVY DDLSKQAVAY RQISLLLKRP PGREAYPGDV FYLHSRLLER 300
  301 ASRVNEEYVE KFTKGAVTGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETDLF 360
  361 NSGLRPAVNP GISVSRVGGA AQTKIIKKLS GGIRTALAQY RELAAFSQFA SDLDDATRAQ 420
  421 LEHGVRVTEL MKQKQYAPMS VAAQAVSIFA AEKGYLKGVE LKKVGDFEAA LLSYMNSEHA 480
  481 ALIKLINETG DYNADIEAEL KAGLDKFVAT QTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qe7A
Description:	No description for 2qe7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits