YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|158430155, gi... - gi\|33329387\|gb\|AAQ10090.1\| ATP synthase subunit beta [Bacillus sp. TA2.A1], gi\|158430155\|pdb\|2QE7\|F ...	699.0	[0..1]	[462..1]
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	695.0	[0..2]	[463..19]
gi\|86605139 - gi\|86605139\|ref\|YP_473902.1\| ATP synthase F1, beta subunit [Cyanobacteria bacterium Yellowstone A-Pr... ATPB_SYNJA - ATP synthase subunit beta OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpD PE=3 SV=1	695.0	[0..2]	[463..10]
gi\|61968281 - gi\|61968281\|gb\|AAX57067.1\| ATP synthase beta subunit [Petalodiscus fadenii]	693.0	[0..2]	[463..7]
gi\|22651724 - gi\|22651724\|gb\|AAM26934.1\| ATP synthase beta subunit [Aldrovanda vesiculosa]	692.0	[0..2]	[463..16]
ATPB_IPOCC - ATP synthase subunit beta, chloroplastic OS=Ipomoea coccinea GN=atpB PE=3 SV=1	691.0	[0..2]	[463..19]
ATPB_MOOTA - ATP synthase subunit beta OS=Moorella thermoacetica (strain ATCC 39073) GN=atpD PE=1 SV=1	690.0	[0..1]	[462..1]
gi\|22651730 - gi\|22651730\|gb\|AAM26937.1\| ATP synthase beta subunit [Drosera regia]	690.0	[0..2]	[463..17]
ATPB_BACCQ - ATP synthase subunit beta OS=Bacillus cereus (strain Q1) GN=atpD PE=3 SV=1 ATPB_BACC7 - ATP synthase subunit beta OS=Bacillus cereus (strain AH187) GN=atpD PE=3 SV=1 gi\|206976897, gi... - gi\|206976897\|ref\|ZP_03237799.1\| ATP synthase F1, beta subunit [Bacillus cereus H3081.97], gi\|2067448... ATPB_BACC1 - ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=atpD PE=3 SV=1 gi\|229142046, gi... - gi\|229142046\|ref\|ZP_04270571.1\| ATP synthase subunit beta [Bacillus cereus BDRD-ST26], gi\|228641335\|...	690.0	[0..1]	[462..1]
ATPB_SHEDO - ATP synthase subunit beta OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=...	689.0	[0..1]	[463..1]

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Predicted Domain #1

Region A:
Residues: [1-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGTVVQVI GAVVDVEFPQ DAVPQVYDAL KITGEGSCNG LVLEVQQQLG GGVVRTIAMG  60
   61 TSDGLRRGLE VVNSGSPISV PVGTATLGRI MNVLGDPIDE AGAIGEEERY VIHRAAPSYE 120
  121 EQSNTTELLE TGIKVIDLVC PFAKGGKVGL FGGAGVGKTV NMMELINNIA KAHSGLSVFA 180
  181 GVGERTREGN DFYYEMKDSG VLDKVAMVYG QMNEPPGNRL RVALTGLTMA EKFRDEGRDV 240
  241 LLFVDNIYRY TLAGTEVSAL LGRMPSAVGY QPTLAEEMGV LQERITSTKT GSITSVQAVY 300
  301 VPADDLTDPS PATTFAHLDA TVVLSRQIAS LGIYPAVDPL DSTSRQLDPL VVGQEHYDVA 360
  361 NGVQTVLQRY KELKDIIAIL GMDELSDDDK MTVSRARKIE RFLSQPFHVA EVFTGSPGKY 420
  421 VSLKDTIRGF KGILSGEFDH IPEQAFYMVG SIDEAVEKAN KKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qe7D
Description:	No description for 2qe7D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits