YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351246, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	599 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351246, gi|....

Description	E-value	Query Range	Subject Range
gi\|78507865, gi\|... - gi\|78684533\|ref\|ZP_00849317.1\| Molybdopterin binding domain:Molybdopterin-guanine dinucleotide biosy...	557.0	[0..1]	[599..1]
gi\|113972205, gi... - gi\|82496157\|ref\|ZP_00881727.1\| Molybdopterin binding domain:Molybdopterin-guanine dinucleotide biosy...	556.0	[0..1]	[599..1]
gi\|28806487, gi\|... - gi\|28898270\|ref\|NP_797875.1\| molybdopterin biosynthesis MoeA protein [Vibrio parahaemolyticus RIMD 2... gi\|28806487 - gi\|28806487\|dbj\|BAC59759.1\| molybdopterin biosynthesis MoeA protein [Vibrio parahaemolyticus RIMD 22...	556.0	[0..5]	[595..1]
gi\|113890897, gi... - gi\|78691203\|ref\|ZP_00855830.1\| Molybdopterin binding domain:Molybdopterin-guanine dinucleotide biosy...	556.0	[0..1]	[599..1]
gi\|254229534, gi... - gi\|75855503\|ref\|ZP_00763152.1\| COG0303: Molybdopterin biosynthesis enzyme [Vibrio sp. Ex25], gi\|2542...	552.0	[0..5]	[595..1]
gi\|78366064, gi\|... - gi\|78366064\|ref\|ZP_00836347.1\| Molybdenum cofactor biosynthesis protein:Molybdopterin-guanine dinucl...	546.0	[0..1]	[599..1]
gi\|77816040, gi\|... - gi\|77816040\|ref\|ZP_00815250.1\| Molybdenum cofactor biosynthesis protein:Molybdopterin-guanine dinucl... gi\|124548564, gi... - gi\|124548564\|ref\|ZP_01707184.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Shewanell...	545.0	[0..1]	[599..1]
gi\|91223739, gi\|... - gi\|91223739\|ref\|ZP_01259003.1\| molybdopterin biosynthesis MoeA protein [Vibrio alginolyticus 12G01],...	544.0	[0..5]	[595..1]
gi\|37198647, gi\|... - gi\|37679901\|ref\|NP_934510.1\| molybdopterin biosynthesis enzyme [Vibrio vulnificus YJ016], gi\|3719864...	541.0	[0..5]	[595..1]
gi\|82742443, gi\|... - gi\|82742443\|ref\|ZP_00905136.1\| Molybdopterin binding domain:Molybdopterin-guanine dinucleotide biosy...	538.0	[0..1]	[599..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPFVNPLS IPVLGFCAYS GTGKTTLLKQ LIPELNQRSL RLAVIKHAHH DFDVDIPGKD  60
   61 SYEMRKAGAR QMLVASHVRW ALMTEDARDG DPELVHLLKQ IEADKVDIVL VEGFKKLTLP 120
  121 KIELHRAAHG KPFIYTQDDN ILAIACCDDT ELPSELRRLD LNNVAQIADF VMEYANSWQA 180
  181 PNPTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1np6A
Description:	Molybdopterin-guanine dinucleotide biosynthesis protein MobB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [186-599]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIATVDACTL GSDKNLSVSQ GLAQILSHVT PVTEVEDIGL DDLDNRVLAH DSISPVDVPQ  60
   61 QTNSAMDGYA FAYQEPMPES FNLVGEVLAG HQYSGTLKAG ETVRIMTGAP VPAGADTVQP 120
  121 RELANEANAK VSFEGRIQQG QHVRLAGEDI GQGQVALTQA TRLSAAEQGL LASLGLNRVT 180
  181 VYRRPTVAVF STGDEVCQPG EALNPNCIYD SNRYTIKAMA KRLGCDVIDL GIIEDSESAL 240
  241 ETTLTKAAAQ ADVVISSGGV SVGDADYIKA VLARLGNIDF WRINMRPGRP LAFGKVGDSL 300
  301 FFGLPGNPVA VMVSFLQFVQ PALRKLGGET NWQAPLFPAI TDETLRSRQG RTEFIRGIYR 360
  361 IANDGRLHVS STGNQGSGML SSMVKGNCLI IIGDDADAVN AGETVFIQPF ADLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	115.0
Match:	1fc5A
Description:	Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain; Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains; MoeA, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.15974340242656	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: