YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376185, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376185, gi|....

Description	E-value	Query Range	Subject Range
gi\|48845511, gi\|... - gi\|78223698\|ref\|YP_385445.1\| anthranilate synthase, component I [Geobacter metallireducens GS-15], g...	483.0	[0..4]	[450..23]
gi\|53765249, gi\|... - gi\|75910917\|ref\|YP_325213.1\| anthranilate synthase, component I [Anabaena variabilis ATCC 29413], gi...	482.0	[0..4]	[450..23]
gi\|39997478, gi\|... - gi\|39997478\|ref\|NP_953429.1\| anthranilate synthase component I [Geobacter sulfurreducens PCA], gi\|39...	480.0	[0..4]	[450..23]
gi\|88936974, gi\|... - gi\|88936974\|ref\|ZP_01142564.1\| Anthranilate synthase component I [Geobacter uraniumreducens Rf4], gi...	480.0	[0..4]	[452..23]
gi\|69255802, gi\|... - gi\|69255802\|ref\|ZP_00605544.1\| Anthranilate synthase component I [Magnetococcus sp. MC-1], gi\|682481...	479.0	[0..4]	[452..23]
gi\|17227824, gi\|... - gi\|17227824\|ref\|NP_484372.1\| anthranilate synthase component I [Nostoc sp. PCC 7120], gi\|17129673\|db... gi\|25291358 - pir\|\|AG1847 anthranilate synthetase alpha-chain [imported] - Nostoc sp. (strain PCC 7120)	479.0	[0..4]	[450..23]
gi\|118580005, gi... - gi\|71836560\|ref\|ZP_00676328.1\| Anthranilate synthase component I [Pelobacter propionicus DSM 2379], ...	478.0	[0..4]	[450..23]
gi\|70732917, gi\|... - gi\|70732917\|ref\|YP_262688.1\| anthranilate synthase component I [Pseudomonas fluorescens Pf-5], gi\|68...	477.0	[0..3]	[449..20]
gi\|71557366, gi\|... - gi\|71736813\|ref\|YP_272948.1\| anthranilate synthase component I [Pseudomonas syringae pv. phaseolicol...	476.0	[0..3]	[449..20]
gi\|24981791, gi\|... - gi\|26987158\|ref\|NP_742583.1\| anthranilate synthase component I [Pseudomonas putida KT2440], gi\|24981...	475.0	[0..3]	[449..20]

Back

Predicted Domain #1

Region A:
Residues: [1-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHALSEDL KSLIDKLIQM KQVPATEPIV QLSLKTVSIP LISWLASQTL YPRIYWHGRD  60
   61 KVEEVAAIGA CKDFKFETGV DDKALASVYE QQRMLSSNPD IRYYGGVAFD RSIESWPEFG 120
  121 NTRFVLPRIE FRRSANQFSL RVNLNFADNN PIDEIDLAIA AIEAVMPARP LAPPNKLTLV 180
  181 SRQDIPDFPH WKTLVEQVIE PKFNQDTPKV VLSRLTELEV NEQVDPWMVL ACWQGRNPNS 240
  241 FQFGFQFSPD RTYISCSPER LFRRSQQELF TEALAGTTVR GLNQEEDVAL ANALLEDNKN 300
  301 SVENQLVRRH IVSMLTPLSQ YVGAEEEATI FKLNHIQHLH RAIRAELKPG VSDFQLLQAL 360
  361 HPTPAVGGLP RESAMTFIRQ REGYMRGWYA GACGYFNKDE SEFSVAIRSA LIEPGKINLF 420
  421 AGAGIIAGSD PEAEWQELEN KLATIMSILI EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.154902
Match:	2euaA
Description:	No description for 2euaA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.48154800529305	bayes_pls_golite062009
isochorismate synthase activity	2.12058677071834	bayes_pls_golite062009
intramolecular transferase activity, transferring hydroxy groups	2.12058677071834	bayes_pls_golite062009
oxo-acid-lyase activity	1.49234742790531	bayes_pls_golite062009
carbon-carbon lyase activity	1.18272988873809	bayes_pls_golite062009
4-amino-4-deoxychorismate synthase activity	1.13392130624907	bayes_pls_golite062009
anthranilate synthase activity	0.47805305233277	bayes_pls_golite062009
lyase activity	0.151487106592176	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: