YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351203, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351203, gi|....

Description	E-value	Query Range	Subject Range
gi\|29831372, gi\|... - gi\|29831372\|ref\|NP_826006.1\| polysaccharide deacetylase/glycosyl transferase [Streptomyces avermitil...	167.0	[0..2]	[230..436]
gi\|47558704, gi\|... - gi\|47564552\|ref\|ZP_00235597.1\| putative bi-functional transferase/deacetylase [Bacillus cereus G9241...	165.0	[0..2]	[240..756]
gi\|72396208, gi\|... - gi\|73669046\|ref\|YP_305061.1\| glycosyltransferase [Methanosarcina barkeri str. Fusaro], gi\|72396208\|g...	164.0	[0..1]	[240..349]
gi\|5042285, gi\|2... - gi\|5042285\|emb\|CAB44539.1\| putative bi-functional transferase/deacetylase [Streptomyces coelicolor A... gi\|7480519 - pir\|\|T34632 probable bi-functional transferase/deacetylase - Streptomyces coelicolor	164.0	[0..2]	[230..389]
gi\|52142108, gi\|... - gi\|52142108\|ref\|YP_084722.1\| group-specific protein [Bacillus cereus E33L], gi\|51975577\|gb\|AAU17127....	164.0	[0..2]	[228..760]
gi\|49478225, gi\|... - gi\|49478225\|ref\|YP_037525.1\| glycosyl transferase and polysaccharide deacetylase fusion [Bacillus th...	164.0	[0..2]	[228..756]
gi\|28807015 - gi\|28807015\|dbj\|BAC60285.1\| putative glycosyl transferase family protein [Vibrio parahaemolyticus RI... gi\|28898796, gi\|... - gi\|28898796\|ref\|NP_798401.1\| putative glycosyl transferase family protein [Vibrio parahaemolyticus R...	164.0	[0..2]	[237..5]
gi\|82496151, gi\|... - gi\|82496151\|ref\|ZP_00881721.1\| glycosyl transferase, group 2 family protein [Shewanella sp. MR-4], g...	163.0	[0..1]	[243..1]
gi\|114049461, gi... - gi\|78691197\|ref\|ZP_00855824.1\| glycosyl transferase, group 2 family protein [Shewanella sp. MR-7], g...	162.0	[0..1]	[243..1]
gi\|78507871, gi\|... - gi\|78684539\|ref\|ZP_00849323.1\| glycosyl transferase, group 2 family protein [Shewanella sp. ANA-3], ...	162.0	[0..1]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVVIPAKD EVGNIGPLMK EICQALQGVT EFEILVVDDG SQDDTFGEVI HTAELMLCNA  60
   61 KAIRHERSTG QSTAISTGVL HARGQYIVTL DADGQNDPAD IPAMLAQLPQ IHAEHFCIAG 120
  121 YRKNRKDTAW KRFQSRFANK VRDALLHDGV PDTGCGLKLF PRETFLRMPY FDHMHRYIPA 180
  181 LVRRMGGEVF ISVVNHRDRQ LGVSKYTAWN RVWVGIVDIM GVIWLGRRAK IAKVARSETR 240
  241 WHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits