YRC Public Data Repository - Protein Structure Prediction

Protein:	COAD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAD_SHEON.

Description	E-value	Query Range	Subject Range
COAD_PHODP - Phosphopantetheine adenylyltransferase OS=Photobacterium damsela subsp. piscicida GN=coaD PE=3 SV=1	173.0	[0..1]	[158..1]
COAD_EXIS2 - Phosphopantetheine adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / ...	171.0	[0..1]	[161..1]
gi\|90580914, gi\|... - gi\|90580914\|ref\|ZP_01236716.1\| phosphopantetheine adenylyltransferase [Vibrio angustum S14], gi\|9043...	171.0	[0..1]	[160..1]
gi\|71556883, gi\|... - gi\|71736330\|ref\|YP_276889.1\| phosphopantetheine adenylyltransferase [Pseudomonas syringae pv. phaseo...	170.0	[0..4]	[160..31]
COAD_MARHV - Phosphopantetheine adenylyltransferase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / D...	170.0	[0..1]	[161..1]
gi\|89076365, gi\|... - gi\|89076365\|ref\|ZP_01162698.1\| phosphopantetheine adenylyltransferase [Photobacterium sp. SKA34], gi...	170.0	[0..1]	[158..1]
COAD_SHESR - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=coaD PE=3 SV=1 COAD_SHESM - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=coaD PE=3 SV=1	169.0	[0..1]	[158..1]
COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis GN=coaD PE=3 SV=1 COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L...	169.0	[0..1]	[162..1]
COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR... COAD_PSEAB - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=coaD PE=3 SV... gi\|94414802 - gi\|94414802\|ref\|ZP_01294656.1\| hypothetical protein PaerP_01003382 [Pseudomonas aeruginosa PA7] gi\|84318612, gi\|... - gi\|84318612\|ref\|ZP_00967034.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... gi\|126196839, gi... - gi\|84324448\|ref\|ZP_00972506.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa GN=coaD PE=3 SV=1 gi\|107099347 - gi\|107099347\|ref\|ZP_01363265.1\| hypothetical protein PaerPA_01000359 [Pseudomonas aeruginosa PACS2] COAD_PSEA8 - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=coaD PE=3 SV=1	169.0	[0..4]	[160..3]
tr\|E4RAP8\|E4RAP8... - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=coaD PE=3 SV=1 COAD_PSEPK - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=coaD PE=3 SV=1	169.0	[0..4]	[161..3]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTRAIYPGT FDPITNGHAD LIERAAKLFK HVIIGIAANP SKQPRFTLEE RVELVNRVTA  60
   61 HLDNVEVVGF SGLLVDFAKE QRASVLVRGL RAVSDFEYEF QLANMNRRLS PDLESVFLTP 120
  121 AEENSFISST LVKEVALHGG DVSQFVHPEV ASALAAKLKL AKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1b6tA
Description:	Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pantetheine-phosphate adenylyltransferase activity	3.03187936898064	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	2.81193878035427	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	1.62370757945153	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	1.62370757945153	bayes_pls_golite062009
adenylyltransferase activity	1.61625530385033	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	1.61089358601097	bayes_pls_golite062009
ligase activity	1.15322915814026	bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity	0.46461802137308	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	0.21096109874233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: