YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376154, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376154, gi|....

Description	E-value	Query Range	Subject Range
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	264.0	[0..2]	[356..1]
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	258.0	[0..2]	[355..1]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	246.0	[0..2]	[356..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	246.0	[0..3]	[356..5]
gi\|20807430 - gi\|20807430\|ref\|NP_622601.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807430, gi\|... - gi\|20807430\|ref\|NP_622601.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515953...	246.0	[0..3]	[356..8]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	244.0	[0..2]	[356..1]
gi\|16605561, gi\|... - gi\|23125888\|ref\|ZP_00107803.1\| COG0438: Glycosyltransferase [Nostoc punctiforme PCC 73102], gi\|18668... gi\|16605561 - gi\|16605561\|emb\|CAC87818.1\| putative sucrose-phosphate synthase [Nostoc punctiforme PCC 73102]	242.0	[0..14]	[356..46]
gi\|110669405, gi... - gi\|110669405\|ref\|YP_659216.1\| hexosyltransferase; glycosyltransferase [Haloquadratum walsbyi DSM 167...	241.0	[0..9]	[355..2]
gi\|37523409, gi\|... - gi\|37523409\|ref\|NP_926786.1\| sucrose-phosphate synthase [Gloeobacter violaceus PCC 7421], gi\|3521441...	241.0	[0..3]	[355..4]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIAIFCHN FFSNGTVKIA LSQAEVLQEA GQDVHLFVFH KEGDFMPPEN VTIHYLYDAG  60
   61 QKPSLQEQRQ HLKAKVAEAE QSGKFSLFLS NSTDCDVVVS GCDFEPCYYF CHCALKQELL 120
  121 MELKRGPVHF WRRWKKAKAL IGKKIITVSN GIADELRATS WLKPQSVQTI YNPFRLEEIR 180
  181 KKTQEVIAEI PNVPYMIHVG RVTRQKRHDI LFKALRDMPT APKLVLLCNR PKKARKLAKK 240
  241 YGVEHRIITP GFQHNPYAWI AKAELMLLSS DFEGLPTVVI ESLACGTPVV STDCPHGPNE 300
  301 ILTGHLAQYL VPVRQPALLA QKALECLASP PALDNLEILK AVDSQYIAAQ YINLAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits