YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376153, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376153, gi|....

Description	E-value	Query Range	Subject Range
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	274.0	[0..4]	[389..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	267.0	[0..1]	[389..1]
gi\|7433883 - pir\|\|F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus horikoshii gi\|3258282, gi\|1... - gi\|3258282\|dbj\|BAA30965.1\| 381aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591592\|...	260.0	[0..1]	[387..1]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	257.0	[0..1]	[389..14]
gi\|54015875, gi\|... - gi\|54024367\|ref\|YP_118609.1\| putative glycosyltransferase [Nocardia farcinica IFM 10152], gi\|5401587...	256.0	[0..4]	[384..1]
gi\|41398164, gi\|... - gi\|41409344\|ref\|NP_962180.1\| hypothetical protein MAP3246 [Mycobacterium avium subsp. paratuberculos...	254.0	[0..3]	[389..7]
gi\|85667091 - gi\|85667091\|ref\|ZP_01029313.1\| hypothetical protein Badol_01000637 [Bifidobacterium adolescentis]	250.0	[0..4]	[389..1]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	248.0	[0..4]	[387..1]
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	247.0	[0..4]	[386..1]
gi\|23465401, gi\|... - gi\|23465401\|ref\|NP_696004.1\| glycosyltransferase [Bifidobacterium longum NCC2705], gi\|23326048\|gb\|AA...	247.0	[0..4]	[389..1]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLKVALLV DEYFGGTGTG TVYGGYGFLA RHLIAKHLPN ENIEVEVLIK KDCSKQRLIP  60
   61 RRYMIDGIKV YRLAAKFMDF LNIRFLKKKN YDLFLSIEMT THSYRILKTI PNIDKKLLFW 120
  121 VQDPRPDYEW DEINTVKLFP EKSYWDSNIY QFVHDLWAAG KVSFISQARF LDRKARDLYN 180
  181 LDDKTEIKYL PNPIEIDHSF DVETHLKKNH IIFLGRIESV KRGWLFCEIA KLMPEYEFFM 240
  241 LGQSFRQSKK NQSIMNNYLD IPNLHFVGHV EGEKKAQLIK DAKILVNTSI HEALPISFLE 300
  301 ALSYGTLLVS CRDPDELTSQ FGVFTGTVLG DGFDKVPLFV DGIRHLMENE PLRRELALKA 360
  361 VNYIKANHSI EDFQKNMQEI IFKLVEETKA QS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits