YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351192, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351192, gi|....

Description	E-value	Query Range	Subject Range
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	271.0	[0..1]	[361..1]
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	268.0	[0..1]	[360..1]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	266.0	[0..1]	[361..1]
gi\|25496713 - pir\|\|B97030 lPS glycosyltransferase CAC1053 [imported] - Clostridium acetobutylicum gi\|15023967, gi\|... - gi\|15894340\|ref\|NP_347689.1\| LPS glycosyltransferase [Clostridium acetobutylicum ATCC 824], gi\|15023...	260.0	[0..1]	[361..1]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	259.0	[0..1]	[361..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	256.0	[0..1]	[361..4]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	253.0	[0..1]	[361..1]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	252.0	[0..1]	[361..1]
gi\|83590766, gi\|... - gi\|83590766\|ref\|YP_430775.1\| glycosyl transferase, group 1 [Moorella thermoacetica ATCC 39073], gi\|8...	251.0	[0..1]	[361..1]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	251.0	[0..1]	[361..17]

Back

Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIAIAIDSL AGGGAEKVMI NLAKQFISLG HEPHFLVMED NRYYETPDNL PVHQCFADKD  60
   61 KDYDHFGRLG ASVDKLRAKI AEIESRVGKF DLFLSNLDKT NLMMTKTGVT PLYVIVHSSV 120
  121 EEELSRQFKL GPFAYFKKLR AKKALNGQHL ITVSNGIAKE IQAKGRLHPA SMRTIYNPFE 180
  181 FNEIVAQSQQ DNPQIPQGDY LIHVGRFAKQ KRHDVLFEAL KQTQNQLPVV LLCHNHKKAI 240
  241 KAAKKFGIEE RLIIPGFQSN PFPWIKRAKA LVLSSDFEGL PTVLIESLAC GTPVVSTDCP 300
  301 HGPNEILTGN LAPYLVPRRN PAALAKMIDA VVAQPPSLEN VEILAKVDAT AIAEQYLALA 360
  361 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits