YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376101, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	660 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376101, gi|....

Description	E-value	Query Range	Subject Range
gi\|113972135, gi... - gi\|82496224\|ref\|ZP_00881794.1\| sulfatase [Shewanella sp. MR-4], gi\|82405798\|gb\|EAP46468.1\| sulfatase...	428.0	[0..1]	[654..1]
gi\|113890810, gi... - gi\|78689258\|ref\|ZP_00853922.1\| sulfatase [Shewanella sp. MR-7], gi\|78511415\|gb\|EAP24773.1\| sulfatase...	426.0	[0..1]	[654..1]
gi\|78507799, gi\|... - gi\|78684467\|ref\|ZP_00849251.1\| sulfatase [Shewanella sp. ANA-3], gi\|78507799\|gb\|EAP21308.1\| sulfatas...	419.0	[0..1]	[654..1]
gi\|160877435, gi... - gi\|160877435\|ref\|YP_001556751.1\| sulfatase [Shewanella baltica OS195], gi\|160862957\|gb\|ABX51491.1\| s...	409.0	[0..1]	[654..1]
gi\|28898510, gi\|... - gi\|28898510\|ref\|NP_798115.1\| hypothetical protein VP1736 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806728 - gi\|28806728\|dbj\|BAC59999.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	406.0	[0..5]	[656..1]
gi\|125995597, gi... - gi\|68542523\|ref\|ZP_00582252.1\| Sulfatase [Shewanella baltica OS155], gi\|68519804\|gb\|EAN43328.1\| Sulf...	405.0	[0..1]	[654..1]
Y1246_HAEIN, YC4... - (P44135) Hypothetical protein HI1246, Uncharacterized protein HI_1246 OS=Haemophilus influenzae GN=H... Y1246_HAEIN - Uncharacterized protein HI_1246 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	400.0	[0..1]	[654..1]
gi\|53732718 - gi\|53732718\|ref\|ZP_00154959.2\| COG1368: Phosphoglycerol transferase and related proteins, alkaline p...	398.0	[0..2]	[654..6]
gi\|37200445, gi\|... - gi\|37675905\|ref\|NP_936301.1\| phosphoglycerol transferase [Vibrio vulnificus YJ016], gi\|37200445\|dbj\|...	395.0	[0..1]	[653..19]
gi\|46133565 - gi\|46133565\|ref\|ZP_00157388.2\| COG1368: Phosphoglycerol transferase and related proteins, alkaline p...	395.0	[0..11]	[654..2]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGLSFRGR QNVHGPFRAI IIFSLLVLAI ATASRIGLGL WQAERVAAVD GWSHLLLQGI  60
   61 RVDIATLCWL WGLAALGTAL FSGDHLIGRV WQWILRLWLT LGLWAILFLE VSTPAFIEEY 120
  121 GIRPNRLYVE YLIYPKEVLS MLWAGRKLEL IFSVVLSIAT LWGGWVLSGK LSKNLRFPRW 180
  181 YWRPVLAVLV IVVTLLGARS TLGHRPLNPA MVAFADDPLV NSLVINSAYS LVFAIKQMGS 240
  241 EEDASEVYGS LDKAEIIATI RQESG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [266-660]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPESAFTSNE IPSLSFNQAS FTGKPKNLVI LLQESLGARF VGSLGGLPLT PNIDALSQEG  60
   61 WYFDNLYATG TRSVRGIEAV TTGFTPTPAR AVVKLGKSQT GFFSIAELLK YHGYTTQFIY 120
  121 GGESHFDNMR SFFLGNGFSD IIDQKDYKSP AFVGSWGVSD EDLMRKANSE FERLHSEGKP 180
  181 FFSLVFSSTN HDPFEFPDGR IELYEQPKQT RNNAAKYADY AIGEFFKLAK NADYWKDTIF 240
  241 IVVADHDSRV GGADLVPVSR FRIPGLILGD NVAPKRDHRI VSQIDLPPTL LSLIGISGSY 300
  301 PMLGRDLTQV SEDWPGRAMM QYDKNFALME GKDVVILQPE KEAQGFQYDE KTEHLTPYAP 360
  361 AAQALEKKAL SWALWGSLAY QQELYRSGNS SNSNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	2qzuA
Description:	No description for 2qzuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits