YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376074, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376074, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	232.0	[0..5]	[368..971]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	219.0	[0..4]	[368..2474]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	219.0	[0..7]	[413..75]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	214.0	[0..7]	[411..109]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	214.0	[0..7]	[410..145]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	212.0	[0..4]	[410..75]
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	209.0	[0..6]	[410..79]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVKNKPVG KSLLGGAMII AGTTVGAGMF SLPVVGSGMW FGYSILMLLG IWFCMLMSGL  60
   61 LLLETNLHFE PGASFDTLTK ETLGQFWRIV NGVSIAFVLY ILTYAYISGG GSIVNHSLQG 120
  121 MGIELPQSVA GLVFTVVLAC IVLISTKAVD RITTIMLGGM IITFFLAIGN LLIEIDVTKL 180
  181 LEPDGNQRFI PYLWVALPFG LASFGYHGNV PSLVKYYGKD SSTIIKAIFV GTFIALIIYV 240
  241 CWLVATMGNI PRSQFSEIIA QGGNMGVLVG ALSKVMESSW LNSMLTLFAN LAVASSFLGV 300
  301 TLGLFDYLAD LFGFDDSRSG RMKTAIVTFV PPTVFGLLFP DGFLIAIGFA ALAATVWAVI 360
  361 VPALMAYKSR QLFPNHQGFR VFGGTPLIIL VVLFGVVTGA CHLLAMANLL PQFS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.44
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits