YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376059, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376059, gi|....

Description	E-value	Query Range	Subject Range
gi\|28867657, gi\|... - gi\|28867657\|ref\|NP_790276.1\| signal recognition particle-docking protein FtsY [Pseudomonas syringae ... tr\|Q88AG3\|Q88AG3... - Signal recognition particle receptor FtsY OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ftsY...	267.0	[0..3]	[507..17]
gi\|77961777 - gi\|77961777\|ref\|ZP_00825608.1\| COG0552: Signal recognition particle GTPase [Yersinia mollaretii ATCC...	266.0	[0..2]	[503..5]
gi\|23471471, gi\|... - gi\|66047975\|ref\|YP_237816.1\| cell division transporter substrate-binding protein FtsY [Pseudomonas s...	266.0	[0..3]	[507..17]
gi\|170018304, gi... - gi\|170018304\|ref\|YP_001723258.1\| cell division protein FtsY [Escherichia coli ATCC 8739], gi\|1697532... gi\|157162941, gi... - gi\|75197390\|ref\|ZP_00707460.1\| COG0552: Signal recognition particle GTPase [Escherichia coli HS], gi... gi\|124500458, gi... - gi\|124528617\|ref\|ZP_01699895.1\| signal recognition particle-docking protein FtsY [Escherichia coli B...	263.0	[0..2]	[507..5]
gi\|75179909, gi\|... - gi\|75179909\|ref\|ZP_00699896.1\| COG0552: Signal recognition particle GTPase [Shigella boydii BS512], ... gi\|81247238, gi\|... - gi\|82545827\|ref\|YP_409774.1\| cell division protein FtsY [Shigella boydii Sb227], gi\|81247238\|gb\|ABB6...	263.0	[0..2]	[507..5]
gi\|71556977, gi\|... - gi\|71736424\|ref\|YP_276881.1\| signal recognition particle-docking protein FtsY [Pseudomonas syringae ...	262.0	[0..3]	[507..17]
gi\|26110508, gi\|... - gi\|26250079\|ref\|NP_756119.1\| cell division protein FtsY [Escherichia coli CFT073], gi\|26110508\|gb\|AA... gi\|227839489, gi... - gi\|227883610\|ref\|ZP_04001415.1\| cell division protein FtsY [Escherichia coli 83972], gi\|227839489\|gb...	262.0	[0..2]	[507..5]
gi\|115514866, gi... - gi\|117625742\|ref\|YP_859065.1\| cell division protein FtsY [Escherichia coli APEC O1], gi\|115514866\|gb...	262.0	[0..2]	[507..5]
gi\|191170595, gi... - gi\|75242739\|ref\|ZP_00726483.1\| COG0552: Signal recognition particle GTPase [Escherichia coli F11], g... gi\|110345296, gi... - gi\|110643704\|ref\|YP_671434.1\| cell division protein FtsY [Escherichia coli 536], gi\|110345296\|gb\|ABG...	262.0	[0..2]	[507..5]
gi\|192932549, gi... - gi\|75260249\|ref\|ZP_00731517.1\| COG0552: Signal recognition particle GTPase [Escherichia coli E22], g... gi\|191169497, gi... - gi\|75227170\|ref\|ZP_00713978.1\| COG0552: Signal recognition particle GTPase [Escherichia coli B7A], g... gi\|218362783, gi... - gi\|218556015\|ref\|YP_002388928.1\| cell division protein FtsY [Escherichia coli IAI1], gi\|218362783\|em...	262.0	[0..2]	[507..5]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGFFSWF RKDKSQDEVV EQTPVVTPSQ TEQDEALAEQ QAEAARLAAE KIAAENAEAE  60
   61 RIAAEQATKA QVEALRLAEA EEQAIKAQAA AERFVEQQAA ETARLAAEQA LAAQLAAEKA 120
  121 ESERIATEQA AKAQAEVEAL RLAEEQAEVA RLAEQQAAEA TRLAAEQALA EQLAAEKAEA 180
  181 EQIQVEQPLE Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #2

Region A:
Residues: [192-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPEPQAKPAK ESFFARLKRG LMRTSENIGS GFIGLFRGKK IDDELFEELE EQLLIADVGV  60
   61 ETTGRLIKSL TEHASRKQLK DAEALYDLLR DEMQKTLDPV AIPLVPENAN GPFVILMVGV 120
  121 NGVGKTTTIG KLAKQYQRQG KSVMLAAGDT FRAAAVEQLQ VWGQRNNIPV VAQHTGADSA 180
  181 SVLFDALQAA KARKIDVLIA DTAGRLQNKS HLMEELKKVV RVMKKLDPEA PHEVMLTLDA 240
  241 STGQNAISQA QLFQEAVGVT GMTISKLDGT AKGGVVFAIA DKFKIPLRYI GVGEQIDDLR 300
  301 TFNSKEFIDA LFTQEKADS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.09691
Match:	2qy9A
Description:	No description for 2qy9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits