YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376052, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376052, gi|....

Description	E-value	Query Range	Subject Range
gi\|3688792 - gi\|3688792\|gb\|AAC62394.1\| HifD [Haemophilus influenzae]	143.0	[0..9]	[185..36]
gi\|46133378 - gi\|46133378\|ref\|ZP_00157093.2\| COG3539: P pilus assembly protein, pilin FimA [Haemophilus influenzae... gi\|145639927, gi... - gi\|145639927\|ref\|ZP_01795527.1\| S-fimbrial protein subunit precursor [Haemophilus influenzae PittII]...	141.0	[0..9]	[185..36]
gi\|18073107 - gi\|18073107\|emb\|CAD12868.1\| GhfD protein [Haemophilus sp. 26E] gi\|3228213 - gi\|3228213\|emb\|CAA07248.1\| FIMD protein [Haemophilus sp.]	139.0	[0..14]	[185..47]
gi\|1737061 - gi\|1737061\|gb\|AAB70874.1\| pilin [Haemophilus influenzae biotype aegyptius]	136.0	[0..9]	[185..46]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVIKFVLV IVVVLLASIT HAADGTIKFD GHLVDQTCTV SVDGVVSPAV ATVTLPTISA  60
   61 GLLNAPGKVA GRTDFEITLS NCQGLANGAK AFFEGGADVE PISGQLINRG DATNVRLQLL 120
  121 DNVDGVGAPI KVGDGFEQLI FSGNVYISNG DGTGAGVLPY AVQYIATGIA TAGSIQSTVT 180
  181 YSIQYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits