YRC Public Data Repository - Protein Structure Prediction

Protein:	MEND_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	573 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEND_SHEON.

Description	E-value	Query Range	Subject Range
gi\|222054607, gi... - gi\|222054607\|ref\|YP_002536969.1\| acetolactate synthase, large subunit, biosynthetic type [Geobacter ...	510.0	[0..9]	[572..1]
gi\|241907074, gi... - gi\|241907074\|ref\|ZP_04791655.1\| acetolactate synthase, large subunit, biosynthetic type [Desulfovibr... gi\|46579787, gi\|... - gi\|46579787\|ref\|YP_010595.1\| acetolactate synthase, large subunit, biosynthetic type [Desulfovibrio ...	509.0	[0..9]	[572..1]
gi\|146399240, gi... - gi\|88936939\|ref\|ZP_01142531.1\| Acetolactate synthase, large subunit, biosynthetic type [Geobacter ur...	509.0	[0..9]	[572..1]
gi\|120562965, gi... - gi\|120602736\|ref\|YP_967136.1\| acetolactate synthase, large subunit, biosynthetic type [Desulfovibrio...	509.0	[0..9]	[572..1]
gi\|72394929, gi\|... - gi\|73667767\|ref\|YP_303782.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina barkeri str. ...	507.0	[0..1]	[572..1]
gi\|21226772, gi\|... - gi\|21226772\|ref\|NP_632694.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina mazei Go1], g...	505.0	[0..1]	[572..1]
gi\|20092588, gi\|... - gi\|20092588\|ref\|NP_618663.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina acetivorans C...	504.0	[0..1]	[572..1]
gi\|88602528, gi\|... - gi\|88602528\|ref\|YP_502706.1\| acetolactate synthase, large subunit, biosynthetic type [Methanospirill...	502.0	[0..12]	[572..3]
gi\|78193729, gi\|... - gi\|78222474\|ref\|YP_384221.1\| acetolactate synthase, large subunit [Geobacter metallireducens GS-15],...	502.0	[0..9]	[572..1]
gi\|39997009, gi\|... - gi\|39997009\|ref\|NP_952960.1\| acetolactate synthase, large subunit, biosynthetic type [Geobacter sulf...	501.0	[0..9]	[572..1]

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Predicted Domain #1

Region A:
Residues: [1-573]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTENTATLN LMWGALILEE LARLGVQHVC MAPGSRSTPL TLAAAKQTKL KRHLHFDERG  60
   61 LGFMALGLAK ASSAPVAIIT TSGTAVANLY PAIVEAWLTH VPLIVLSGDR PPELLGCGAN 120
  121 QAIVQPAIFA NYAQQVNLPT PDAHIAPQML LTTLDEAVAN QTRPVHINCM YREPLYPSEL 180
  181 TATILDSESP YLKPLQTWLQ QARPYTIYGK REQLSHPSED AIMRFVHGKG VIIAGTLTPE 240
  241 QDPQQLIALS QKIGWPLLTD AQSQLRQHPA AIGNIDQLLQ HPKARNLLQE ADRVLVFGGR 300
  301 LLSKRLIAYL AEQNWHSYWQ VLPQQDRLDP SHNAKHIWHA NAAQFAQLNW YRSSSANWAN 360
  361 TLITYNDDLH HLFVRNIDQG EFGEAQVIRA IANTRPLEQQ LFIGNSLPVR LYDMYAPVSC 420
  421 CTATTYTNRG ASGIDGLLAT ACGIAAHQGK PTSLIIGDLS QLHDLNSFAI ARSLTSPLVI 480
  481 IILNNDGGNI FNLLPVPNEE LRSDYYRLSH GLEFGYAAAM FNLPYNQVDN LADFQTCYNE 540
  541 ALDFQGASVI EVTVSQHQAS EQIAALNLWV KQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	1ybhA
Description:	Crystal structure of Arabidopsis thaliana Acetohydroxyacid synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits