YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376042, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376042, gi|....

Description	E-value	Query Range	Subject Range
gi\|75854131, gi\|... - gi\|75854131\|ref\|ZP_00761845.1\| COG3301: Formate-dependent nitrite reductase, membrane component [Vib...	211.0	[0..2]	[313..6]
gi\|91227193, gi\|... - gi\|91227193\|ref\|ZP_01261652.1\| nitrate reductase, formate dependent (NrfD) [Vibrio alginolyticus 12G...	211.0	[0..2]	[313..6]
gi\|28806918 - gi\|28806918\|dbj\|BAC60189.1\| nitrate reductase, formate dependent (NrfD) [Vibrio parahaemolyticus RIM... gi\|149746174, gi... - gi\|153840174\|ref\|ZP_01992841.1\| cytochrome c nitrite reductase, NrfD subunit [Vibrio parahaemolyticu... gi\|28806918, gi\|... - gi\|28898700\|ref\|NP_798305.1\| nitrate reductase, formate dependent (NrfD) [Vibrio parahaemolyticus RI...	209.0	[0..2]	[313..6]
gi\|90413332, gi\|... - gi\|90413332\|ref\|ZP_01221326.1\| Putative nitrate reductase, formate dependent (NrfD) [Photobacterium ...	205.0	[0..3]	[313..8]
gi\|54308454, gi\|... - gi\|54308454\|ref\|YP_129474.1\| putative nitrate reductase, formate dependent (NrfD) [Photobacterium pr...	205.0	[0..3]	[313..8]
gi\|145638123, gi... - gi\|145638123\|ref\|ZP_01793733.1\| cytochrome c-type protein NrfB [Haemophilus influenzae PittII], gi\|1... gi\|46133264 - gi\|46133264\|ref\|ZP_00203114.1\| COG3301: Formate-dependent nitrite reductase, membrane component [Hae...	199.0	[0..3]	[312..8]
NRFD_HAEIN - Protein nrfD homolog OS=Haemophilus influenzae GN=nrfD PE=3 SV=1 NRFD_HAEIN - Protein NrfD homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=nrfD P...	198.0	[0..3]	[312..8]
gi\|33151580, gi\|... - gi\|33151580\|ref\|NP_872933.1\| nitrate reductase, transmembrane protein [Haemophilus ducreyi 35000HP],...	198.0	[0..3]	[313..6]
gi\|69949723, gi\|... - gi\|69949723\|ref\|ZP_00637687.1\| Polysulphide reductase, NrfD [Shewanella frigidimarina NCIMB 400], gi...	198.0	[0..1]	[312..1]
gi\|74277340, gi\|... - gi\|75428949\|ref\|ZP_00731988.1\| formate-dependent nitrite reductase, membrane component [Actinobacill...	197.0	[0..3]	[312..6]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALHFDTLV WHWPIAIYLF LAGASAGAMF FAVLLKHFVL KHNAYQSGFV QAACIVAPVA  60
   61 VMAGLGILVL DLTKPFDFWK ILVFYNPTSV MSMGVLILLI YQVFMFMWIG LLFRKPIDAW 120
  121 CENRFPIVLK LTALLSRFEA TITGLLVIFS LALGAYTGFL LSALPGYPML KNPVLPLLFL 180
  181 ASGLSSGAAC SLLGGVLLNA NPNAKEVHFI HKVEIPLILV EIVLIFTFFM GLVL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [235-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGQSKLAAF NAIGYGFWGW IFWLGIVGIG LSGPLAMNLF MTATSKRKWA YVAGTACLSL  60
   61 IGVLLLRNFI LYTGQMTVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits