YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350983, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350983, gi|....

Description	E-value	Query Range	Subject Range
gi\|146862902, gi... - gi\|149117066\|ref\|ZP_01843773.1\| cytoplasmic chaperone TorD family protein [Shewanella baltica OS223]... gi\|113909984, gi... - gi\|113947550\|ref\|ZP_01433215.1\| cytoplasmic chaperone TorD [Shewanella baltica OS195], gi\|113909984\|...	205.0	[0..1]	[225..18]
gi\|68518359, gi\|... - gi\|68543946\|ref\|ZP_00583629.1\| Cytoplasmic chaperone TorD [Shewanella baltica OS155], gi\|68518359\|gb...	203.0	[0..1]	[225..18]
gi\|78684372, gi\|... - gi\|78684372\|ref\|ZP_00849156.1\| TorA specific chaperone, putative [Shewanella sp. ANA-3], gi\|78507704...	201.0	[0..1]	[225..18]
gi\|77814904, gi\|... - gi\|77814904\|ref\|ZP_00814154.1\| Cytoplasmic chaperone TorD [Shewanella putrefaciens CN-32], gi\|778100...	198.0	[0..1]	[225..1]
gi\|124508316, gi... - gi\|124548630\|ref\|ZP_01707217.1\| cytoplasmic chaperone TorD [Shewanella putrefaciens 200], gi\|1245083... gi\|82741654, gi\|... - gi\|82741654\|ref\|ZP_00904370.1\| TorA specific chaperone, putative [Shewanella sp. W3-18-1], gi\|827209...	198.0	[0..1]	[225..1]
gi\|113890717, gi... - gi\|114049275\|ref\|YP_739825.1\| cytoplasmic chaperone TorD family protein [Shewanella sp. MR-7], gi\|11...	196.0	[0..1]	[225..1]
gi\|113886729, gi... - gi\|113972045\|ref\|YP_735838.1\| cytoplasmic chaperone TorD family protein [Shewanella sp. MR-4], gi\|11...	196.0	[0..1]	[225..1]
gi\|114561243, gi... - gi\|69951972\|ref\|ZP_00639584.1\| Cytoplasmic chaperone TorD [Shewanella frigidimarina NCIMB 400], gi\|6...	186.0	[0..1]	[217..1]
gi\|68544992, gi\|... - gi\|68544992\|ref\|ZP_00584543.1\| Cytoplasmic chaperone TorD [Shewanella amazonensis SB2B], gi\|68516860...	184.0	[0..1]	[214..1]
gi\|78361171, gi\|... - gi\|78366817\|ref\|ZP_00837094.1\| Cytoplasmic chaperone TorD [Shewanella sp. PV-4], gi\|78361171\|gb\|EAP0...	183.0	[0..1]	[215..18]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESVRQVSE NDQLRADIYQ LLAALLRRHP SLELLQFLAN LEIDANEDNE MTKAWLSLQL  60
   61 AAKQFTSEQL EDEYFALFLG VGCGEILPYG SWFMTGSLMD KPLALLRQDL MQLGFEREEN 120
  121 VKEPEDHVAA LCEVMGTLIL EAPGYRQLAF YQRHMGSWIQ RFCDNLAKAP SAAFYATVAE 180
  181 LAKAFFKMEA AEFEQLSLDI PVNCPGSAEL QPAASDVKKQ AELMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	1n1cA
Description:	TorA specific chaperone TorD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	0.272931224731761	bayes_pls_golite062009
binding	0.240698431310767	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: