YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350967, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350967, gi|....

Description	E-value	Query Range	Subject Range
gi\|47174902 - gi\|47174902\|gb\|AAT12436.1\| TnpA [Salmonella enterica]	332.0	[0..2]	[398..4]
gi\|75234766, gi\|... - gi\|75234766\|ref\|ZP_00719076.1\| COG3328: Transposase and inactivated derivatives [Escherichia coli E1...	331.0	[0..2]	[398..4]
gi\|10567527 - gi\|10567527\|gb\|AAG18473.1\|AF143819_2 transposase-like protein; TnpA [Escherichia coli]	331.0	[0..2]	[398..4]
gi\|90309326, gi\|... - gi\|90309326\|gb\|ABD93710.1\| TnpA [Edwardsiella ictaluri], gi\|162404915\|gb\|ABX88888.1\| transposase [Ed...	330.0	[0..2]	[398..15]
gi\|108810404, gi... - gi\|229900582\|ref\|ZP_04515707.1\| putative transposase [Yersinia pestis Nepal516], gi\|229682363\|gb\|EEO... gi\|108809522, gi... - gi\|108809522\|ref\|YP_653438.1\| putative transposase [Yersinia pestis Antiqua], gi\|108781435\|gb\|ABG154... gi\|22127688, gi\|... - gi\|22127688\|ref\|NP_671111.1\| transposase [Yersinia pestis KIM], gi\|21960805\|gb\|AAM87362.1\|AE013984_8... gi\|167053957, gi... - gi\|167427030\|ref\|ZP_02318783.1\| IS285, transposase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|167402110, gi... - gi\|167402110\|ref\|ZP_02307587.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|166205078, gi... - gi\|166213676\|ref\|ZP_02239711.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. B42003004], ...	330.0	[0..2]	[399..4]
gi\|89102151 - gi\|89102151\|ref\|ZP_01174808.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis bio...	329.0	[0..2]	[399..10]
gi\|169749212, gi... - gi\|170022678\|ref\|YP_001719183.1\| transposase mutator type [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470668, gi... - gi\|167470668\|ref\|ZP_02335372.1\| IS285, transposase [Yersinia pestis FV-1], gi\|167470598\|ref\|ZP_02335... gi\|186895880, gi... - gi\|186897561\|ref\|YP_001874672.1\| transposase mutator type [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|162417845, gi... - gi\|77636509\|ref\|ZP_00798582.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis Ang... gi\|166012175, gi... - gi\|166012175\|ref\|ZP_02233073.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|165922804, gi... - gi\|165927708\|ref\|ZP_02223540.1\| IS285, transposase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|167051094, gi... - gi\|167402399\|ref\|ZP_02307862.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|25316080, gi\|... - pir\|\|T14710 probable transposase - Yersinia pestis plasmid pMT1, gi\|52788138\|ref\|YP_093966.1\| putat... gi\|166210624, gi... - gi\|166214486\|ref\|ZP_02240521.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|22125270, gi\|... - gi\|3883062\|gb\|AAC82722.1\| transposase [Yersinia pestis KIM], gi\|31795392\|ref\|NP_857845.1\| transposas... gi\|167424935, gi... - gi\|167427140\|ref\|ZP_02318893.1\| IS285, transposase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|45442348, gi\|... - gi\|45478710\|ref\|NP_995566.1\| transposase [Yersinia pestis biovar Microtus str. 91001], gi\|45443233\|r... gi\|166963203, gi... - gi\|167422595\|ref\|ZP_02314348.1\| IS285, transposase [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|51595054, gi\|... - gi\|51597611\|ref\|YP_071802.1\| putative transposase [Yersinia pseudotuberculosis IP 32953], gi\|5159642... gi\|108812968, gi... - gi\|229904765\|ref\|ZP_04519875.1\| putative transposase [Yersinia pestis Nepal516], gi\|229903402\|ref\|ZP... gi\|16121857, gi\|... - gi\|5834763\|emb\|CAB55262.1\| putative transposase [Yersinia pestis CO92], gi\|218930876\|ref\|YP_00234875... gi\|165939665, gi... - gi\|89105765\|ref\|ZP_01178279.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis bio... gi\|108808523, gi... - gi\|108808536\|ref\|YP_652452.1\| transposase for the IS285 insertion element [Yersinia pestis Antiqua],... gi\|229895445, gi... - gi\|229896446\|ref\|ZP_04511614.1\| putative transposase [Yersinia pestis Pestoides A], gi\|229895895\|ref... Q66FZ8\|Q66FZ8_YERPS - Putative transposase for IS285 insertion element - Yersinia pseudotuberculosis gi\|229838371, gi... - gi\|229897806\|ref\|ZP_04512961.1\| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|149292494, gi... - gi\|153997071\|ref\|ZP_02022204.1\| transposase for the IS285 insertion element [Yersinia pestis CA88-41... gi\|229843584, gi... - gi\|229900365\|ref\|ZP_04515499.1\| putative transposase [Yersinia pestis biovar Orientalis str. India 1... gi\|145211022, gi... - gi\|145600358\|ref\|YP_001164434.1\| transposase for the IS285 insertion element [Yersinia pestis Pestoi...	329.0	[0..2]	[399..4]
gi\|49658889 - gi\|49658889\|emb\|CAF28515.1\| is285 transposase [Yersinia pseudotuberculosis]	329.0	[0..2]	[399..4]
gi\|108782150, gi... - gi\|108793603\|ref\|YP_636759.1\| transposase [Yersinia pestis Antiqua], gi\|108782150\|gb\|ABG16207.1\| tra... gi\|167402259, gi... - gi\|167402259\|ref\|ZP_02307730.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ...	329.0	[0..2]	[399..4]
gi\|45437365, gi\|... - gi\|45442500\|ref\|NP_994039.1\| transposase for the IS285 insertion element [Yersinia pestis biovar Mic...	328.0	[0..2]	[399..4]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTFDINA AIQALREGKD LTGKDGILTP LIKQLTEAAL AAELDGHLAS TEGANRKNGK  60
   61 TTKTVKSPLG NFELNTPRDR AGTFEPQLVK KHQTQLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEMERKIIGL FSLGSSYQDI RAHIEDMYGM SVSNGTVNAI TDKLLPELQA WRERELEPLY  60
   61 PVIWLDAIHY KIKENGRFIS KAVYTILALN VEGKKELLGL YLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNEGAHHWLS VLTDLYNRGV KDILIACVDG LKGFPEAIET IYPQTEVQLC VIHQIRNSMK  60
   61 YVASKHQKAF MADLKCVYKA ATLNAAEMAL DELETKWGDK YPVVIKSWRN KWALLSVYFK 120
  121 YPDYVRTAIY TTNAVEAVHR QFRKLTKTKG GFANENSLLK LLYAGILKAS ERWTHPIQNW 180
  181 NLTLSQLSIH FEGRLENHID L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits