YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350912, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350912, gi|....

Description	E-value	Query Range	Subject Range
gi\|68545079, gi\|... - gi\|68545079\|ref\|ZP_00584630.1\| Radical SAM:Molybdenum cofactor synthesis C [Shewanella amazonensis S...	260.0	[0..1]	[326..15]
gi\|69951946, gi\|... - gi\|69951946\|ref\|ZP_00639558.1\| Radical SAM:Molybdenum cofactor synthesis C [Shewanella frigidimarina...	259.0	[0..1]	[326..12]
gi\|126172537, gi... - gi\|68541241\|ref\|ZP_00580987.1\| Radical SAM:Molybdenum cofactor synthesis C [Shewanella baltica OS155... gi\|151363448, gi... - gi\|152998830\|ref\|YP_001364511.1\| molybdenum cofactor biosynthesis protein A [Shewanella baltica OS18... gi\|217496625, gi... - gi\|217971490\|ref\|YP_002356241.1\| molybdenum cofactor biosynthesis protein A [Shewanella baltica OS22...	257.0	[0..1]	[326..12]
gi\|77814641, gi\|... - gi\|77814641\|ref\|ZP_00813899.1\| Radical SAM:Molybdenum cofactor synthesis C [Shewanella putrefaciens ... gi\|82719920, gi\|... - gi\|82742717\|ref\|ZP_00905399.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. W3-18-1], gi\|82719920\|g...	256.0	[0..1]	[326..12]
gi\|113908451, gi... - gi\|160873411\|ref\|YP_001552727.1\| molybdenum cofactor biosynthesis protein A [Shewanella baltica OS19...	256.0	[0..1]	[326..12]
gi\|113890677, gi... - gi\|78691074\|ref\|ZP_00855705.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. MR-7], gi\|78509528\|gb\|E...	256.0	[0..1]	[326..12]
gi\|148225025, gi... - gi\|49258030\|gb\|AAH74319.1\| MGC84142 protein [Xenopus laevis], gi\|148225025\|ref\|NP_001086201.1\| MGC84...	254.0	[0..2]	[326..63]
gi\|78687246, gi\|... - gi\|78687246\|ref\|ZP_00851999.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. ANA-3], gi\|78504991\|gb\|...	254.0	[0..1]	[326..12]
gi\|71847249, gi\|... - gi\|71907628\|ref\|YP_285215.1\| radical SAM:molybdenum cofactor synthesis C-terminal [Dechloromonas aro...	254.0	[0..4]	[326..34]
gi\|82495513, gi\|... - gi\|82495513\|ref\|ZP_00881088.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. MR-4], gi\|82406397\|gb\|E...	254.0	[0..1]	[326..12]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLQDNFGR KFHYLRMSVT DVCNFKCSYC LPDGYHPNGK QQFLSLSEIE NLVSAFSLVG  60
   61 TQKIRITGGE PTLRKDFTDI IRVVADNPRI HTVATTTNGY RLEKHAKEWF DAGLRRINVS 120
  121 VDSLDPKMFY QITGENKFDE VMRGIDAALS AGFERVKVNA VLLKGMNDKD LPRFLNWIKH 180
  181 TPIDLRFIEL METGLGREYF QAHHLAGADI KALLQAEGWQ LDIPSADDGP AQNFSHSDFK 240
  241 GRIGLIMPYA TNFCASCNRL RVSAKGKLHL CLFTESGIDL RDLLQHPSQQ AELIERLHGQ 300
  301 LAQKKETHYL HQGITGVTQH LASIGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	2fb2A
Description:	No description for 2fb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits