YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375924, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375924, gi|....

Description	E-value	Query Range	Subject Range
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	398.0	[0..1]	[366..1]
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	397.0	[0..1]	[366..4]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	395.0	[0..3]	[360..15]
gi\|20808383 - gi\|20808383\|ref\|NP_623554.1\| ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, A... gi\|20516995, gi\|... - gi\|20808383\|ref\|NP_623554.1\| ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, A...	393.0	[0..1]	[367..1]
gi\|57641710, gi\|... - gi\|57641710\|ref\|YP_184188.1\| ABC-type maltdextrin transport system, ATPase component [Thermococcus k...	392.0	[0..1]	[367..1]
gi\|226512138, gi... - gi\|254493098\|ref\|ZP_05106269.1\| spermidine/putrescine ABC transporter [Neisseria gonorrhoeae 1291], ... gi\|59717542, gi\|... - gi\|59800647\|ref\|YP_207359.1\| putative ABC transporter, ATP-binding protein, polyamine [Neisseria gon...	392.0	[0..3]	[362..69]
gi\|114805627, gi... - gi\|167039694\|ref\|YP_001662679.1\| ABC transporter related [Thermoanaerobacter sp. X514], gi\|166853934... gi\|241884346, gi... - gi\|241903280\|ref\|ZP_04788006.1\| ABC transporter related protein [Thermoanaerobacter brockii subsp. f... gi\|242256473, gi... - gi\|242256473\|ref\|ZP_04801363.1\| ABC transporter related protein [Thermoanaerobacter sp. X513], gi\|24... gi\|256400268\|ref... - ABC transporter related protein [Thermoanaerobacter sp. X561] gi\|167036983, gi... - gi\|167036983\|ref\|YP_001664561.1\| ABC transporter related [Thermoanaerobacter pseudethanolicus ATCC 3...	391.0	[0..1]	[367..1]
gi\|7442568, gi\|5... - pir\|\|B75207 multiple sugar-binding transport ATP-binding protein msmk PAB0123 - Pyrococcus abyssi (s... gi\|14520399, gi\|... - gi\|5457614\|emb\|CAB49105.1\| malK-2 ATP hydrolyzing subunit of the trehalose/maltose transport system ...	391.0	[0..1]	[366..1]
gi\|13475457, gi\|... - gi\|14026209\|dbj\|BAB52807.1\| ABC transporter, polyamine transport protein, ATP-binding protein [Mesor...	390.0	[0..3]	[366..23]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIIADLHC QIQNHKHIKL SAEFSCKAGE VLAVVGPSGG GKTTLLRMIA GLNHPDAGSI  60
   61 VFGETPWFDN KSRTALTPQQ RHIGYMPQHF GLFPNLTALE NVVAGLDHIP KSARIARAKD 120
  121 WLDRVNLQGL PDRLPMHLSG GQRQRVALAR ALAREPSVLL LDEPFSAVDR ETRERLYLEL 180
  181 ARLKEQLLCP VIMVTHDLNE ALLLADSMIL ISQGQMLQQG VPFEVLSRPR NEAVARQMGL 240
  241 RNIFDGEVVF QDRTKDITWL KFGEQLIASD FGKDRSVGSN VRWVIPNQGI RFNAITNGRL 300
  301 CRSFNKLDIT IDSLLVMGES VRVVCYVTGT KLLLNTEVSL HLAQKLGLTK GMQTTVALKS 360
  361 EQIHILE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits