YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350861, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	603 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350861, gi|....

Description	E-value	Query Range	Subject Range
gi\|187429977, gi... - gi\|75176744\|ref\|ZP_00696872.1\| COG1217: Predicted membrane GTPase involved in stress response [Shige... gi\|82546215, gi\|... - gi\|82546215\|ref\|YP_410162.1\| GTP-binding protein [Shigella boydii Sb227], gi\|81247626\|gb\|ABB68334.1\|...	652.0	[0..1]	[602..1]
gi\|83586280, gi\|... - gi\|83586280\|ref\|ZP_00924916.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche...	652.0	[0..1]	[602..1]
TYPA_ECO27 - GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 GN=typA PE=3 SV=1 EG11837 - GTP-binding protein / GTPase, regulatory, ribosome-associated TYPA_ECOL6 - GTP-binding protein TypA/BipA OS=Escherichia coli O6 GN=typA PE=3 SV=1 TYPA_ECOLI - GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A) - Escherichia coli gi\|91213417, gi\|... - gi\|91213417\|ref\|YP_543403.1\| GTP-binding protein [Escherichia coli UTI89], gi\|91074991\|gb\|ABE09872.1... gi\|13364269, gi\|... - gi\|15834047\|ref\|NP_312820.1\| GTP-binding protein [Escherichia coli O157:H7 str. Sakai], gi\|13364269\|... gi\|110644211, gi... - gi\|110644211\|ref\|YP_671941.1\| GTP-binding protein [Escherichia coli 536], gi\|110345803\|gb\|ABG72040.1... gi\|208729123, gi... - gi\|208809322\|ref\|ZP_03251659.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|195937509 - gi\|195937509\|ref\|ZP_03082891.1\| GTP-binding protein [Escherichia coli O157:H7 str. EC4024] gi\|208819085, gi... - gi\|208819085\|ref\|ZP_03259405.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|208734610, gi... - gi\|208813333\|ref\|ZP_03254662.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|209921345, gi... - gi\|209921345\|ref\|YP_002295429.1\| GTP-binding protein [Escherichia coli SE11], gi\|209914604\|dbj\|BAG79... gi\|209159566, gi... - gi\|209398166\|ref\|YP_002273387.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4115], gi... gi\|217321483, gi... - gi\|217325262\|ref\|ZP_03441346.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. TW14588], gi... TYPA_ECO27 - GTP-binding protein TypA/BipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1 gi\|168775308, gi... - gi\|187769216\|gb\|EDU33060.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|168768160, gi... - gi\|189362590\|gb\|EDU81009.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|189373257, gi... - gi\|189373257\|gb\|EDU91673.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|189001563, gi... - gi\|189001563\|gb\|EDU70549.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|169757043, gi... - gi\|170022115\|ref\|YP_001727069.1\| GTP-binding protein [Escherichia coli ATCC 8739], gi\|169757043\|gb\|A... gi\|168799563, gi... - gi\|189378025\|gb\|EDU96441.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|170521357, gi... - gi\|170683639\|ref\|YP_001746201.1\| GTP-binding protein TypA [Escherichia coli SMS-3-5], gi\|170521357\|g... gi\|170083343, gi... - gi\|170083343\|ref\|YP_001732663.1\| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B], gi\|... gi\|75237836, gi\|... - gi\|75237836\|ref\|ZP_00721851.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|191166444, gi... - gi\|75230391\|ref\|ZP_00716877.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|75210112, gi\|... - gi\|75210112\|ref\|ZP_00710291.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|157069023, gi... - gi\|75197746\|ref\|ZP_00707816.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|75188605, gi\|... - gi\|75188605\|ref\|ZP_00701872.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|227885392, gi... - gi\|227885392\|ref\|ZP_04003197.1\| GTP-binding protein [Escherichia coli 83972], gi\|227837650\|gb\|EEJ481... gi\|218363200, gi... - gi\|218556431\|ref\|YP_002389345.1\| GTP-binding protein [Escherichia coli IAI1], gi\|218363200\|emb\|CAR00... gi\|226902840, gi... - gi\|237702903\|ref\|ZP_04533384.1\| GTP-binding protein TypA/BipA [Escherichia sp. 3_2_53FAA], gi\|226902... gi\|218358681, gi... - gi\|218551140\|ref\|YP_002384931.1\| GTP-binding protein [Escherichia fergusonii ATCC 35469], gi\|2183586... gi\|238902938, gi... - gi\|238902938\|ref\|YP_002928734.1\| GTP-binding protein [Escherichia coli BW2952], gi\|238861393\|gb\|ACR6... gi\|24054436, gi\|... - gi\|24115159\|ref\|NP_709669.1\| GTP-binding protein [Shigella flexneri 2a str. 301], gi\|24054436\|gb\|AAN... gi\|218692158, gi... - gi\|218692158\|ref\|YP_002400370.1\| GTP-binding protein [Escherichia coli ED1a], gi\|218429722\|emb\|CAR10... gi\|251787135, gi... - gi\|251787135\|ref\|YP_003001439.1\| hypothetical protein B21_03705 [Escherichia coli BL21], gi\|24237940... TYPA_SHIFL - GTP-binding protein TypA/BipA OS=Shigella flexneri GN=typA PE=3 SV=1 gi\|85676188, gi\|... - gi\|89110157\|ref\|AP_003937.1\| GTP-binding protein [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|218367715, gi... - gi\|218560946\|ref\|YP_002393859.1\| GTP-binding protein [Escherichia coli S88], gi\|218367715\|emb\|CAR055... gi\|253775493, gi... - gi\|254290572\|ref\|YP_003056320.1\| GTP-binding protein [Escherichia coli BL21(DE3)], gi\|253979879\|gb\|A... TYPA_ECO57 - GTP-binding protein TypA/BipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1 gi\|81243103, gi\|... - gi\|82778955\|ref\|YP_405304.1\| GTP-binding protein [Shigella dysenteriae Sd197], gi\|81243103\|gb\|ABB638... gi\|218371416, gi... - gi\|218701430\|ref\|YP_002409059.1\| GTP-binding protein [Escherichia coli IAI39], gi\|218371416\|emb\|CAR1... gi\|253975723, gi... - gi\|254163822\|ref\|YP_003046930.1\| GTP-binding protein [Escherichia coli B str. REL606], gi\|253975723\|... TYPA_ECOL6 - GTP-binding protein TypA/BipA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=typA... gi\|188496233, gi... - gi\|75513980\|ref\|ZP_00736333.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|218697585, gi... - gi\|218697585\|ref\|YP_002405252.1\| GTP-binding protein [Escherichia coli 55989], gi\|218354317\|emb\|CAV0... gi\|254595264, gi... - gi\|254795864\|ref\|YP_003080701.1\| GTP-binding protein [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|12518753, gi\|... - gi\|15804456\|ref\|NP_290496.1\| GTP-binding protein [Escherichia coli O157:H7 EDL933], gi\|12518753\|gb\|A... gi\|192929361, gi... - gi\|75258147\|ref\|ZP_00729608.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... EG11837 - GTP-binding protein / GTPase, regulatory, ribosome-associated gi\|193067998, gi... - gi\|75238313\|ref\|ZP_00722312.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|218707497, gi... - gi\|218707497\|ref\|YP_002415016.1\| GTP-binding protein [Escherichia coli UMN026], gi\|218434594\|emb\|CAR... gi\|188016741, gi... - gi\|188016741\|gb\|EDU54863.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168761758, gi... - gi\|189367898\|gb\|EDU86314.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168755543, gi... - gi\|189357181\|gb\|EDU75600.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|115515268, gi... - gi\|117626144\|ref\|YP_859467.1\| GTP-binding protein [Escherichia coli APEC O1], gi\|115515268\|gb\|ABJ033... gi\|124501236, gi... - gi\|124527534\|ref\|ZP_01698999.1\| GTP-binding protein TypA [Escherichia coli B], gi\|124501236\|gb\|EAY48...	651.0	[0..1]	[602..1]
gi\|194435177, gi... - gi\|83568945\|ref\|ZP_00920411.1\| COG1217: Predicted membrane GTPase involved in stress response [Shige...	650.0	[0..1]	[602..1]
gi\|30043100, gi\|... - gi\|30064840\|ref\|NP_839011.1\| GTP-binding protein [Shigella flexneri 2a str. 2457T], gi\|30043100\|gb\|A...	649.0	[0..1]	[602..1]
gi\|205348302, gi... - gi\|205348302\|gb\|EDZ34933.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ha... gi\|194443181, gi... - gi\|194443181\|ref\|YP_002043230.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|194451908, gi... - gi\|194451908\|ref\|YP_002048011.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar He... gi\|194711909, gi... - gi\|194736407\|ref\|YP_002116928.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|168237624, gi... - gi\|197289403\|gb\|EDY28768.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Sc... gi\|205336867, gi... - gi\|205336867\|gb\|EDZ23631.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar He... gi\|16762424 - gi\|16762424\|ref\|NP_458041.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16504728, gi\|... - pir\|\|AH0949 GTP-binding protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (stra... gi\|11024578 - gi\|11024578\|emb\|CAC14268.1\| BipA GTPase [Salmonella enterica] gi\|56415855, gi\|... - gi\|56415855\|ref\|YP_152930.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paraty... gi\|213426416 - gi\|213426416\|ref\|ZP_03359166.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213616219 - gi\|213616219\|ref\|ZP_03372045.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213852016 - gi\|213852016\|ref\|ZP_03381548.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|214002898 - gi\|214002898\|ref\|ZP_03413633.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|205354409, gi... - gi\|205354409\|ref\|YP_002228210.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Ga... gi\|207859200, gi... - gi\|207859200\|ref\|YP_002245851.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar En... gi\|213027497 - gi\|213027497\|ref\|ZP_03341944.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213162860 - gi\|213162860\|ref\|ZP_03348570.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|197096262, gi... - gi\|197364785\|ref\|YP_002144422.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Pa... gi\|198242119, gi... - gi\|198242119\|ref\|YP_002217929.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|200388210, gi... - gi\|200388210\|ref\|ZP_03214822.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova... gi\|204930278, gi... - gi\|204930278\|ref\|ZP_03221255.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova...	649.0	[0..1]	[603..1]
gi\|62182470, gi\|... - gi\|62182470\|ref\|YP_218887.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Choler... gi\|197251595, gi... - gi\|197251595\|ref\|YP_002148927.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|238912152 - gi\|238912152\|ref\|ZP_04655989.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Ten... gi\|194456130, gi... - gi\|194469766\|ref\|ZP_03075750.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova... gi\|205341844, gi... - gi\|205341844\|gb\|EDZ28608.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar We... gi\|195630129, gi... - gi\|195630129\|gb\|EDX48769.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ne... gi\|205332778, gi... - gi\|205332778\|gb\|EDZ19542.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ke... gi\|205323663, gi... - gi\|205323663\|gb\|EDZ11502.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Sa... gi\|161617132, gi... - gi\|161617132\|ref\|YP_001591097.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Pa...	648.0	[0..1]	[603..1]
gi\|113890647, gi... - gi\|78691128\|ref\|ZP_00855757.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella... gi\|82495546, gi\|... - gi\|82495546\|ref\|ZP_00881121.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella...	648.0	[0..1]	[603..1]
gi\|127514481, gi... - gi\|78365939\|ref\|ZP_00836222.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella...	648.0	[0..1]	[602..1]
gi\|29143912, gi\|... - gi\|29143912\|ref\|NP_807254.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi ...	648.0	[0..1]	[603..1]

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Predicted Domain #1

Region A:
Residues: [1-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLENLRNIAI IAHVDHGKTT LVDKLLSQSG TLATRGEATE RVMDSNDLEK ERGITILAKN  60
   61 TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG 120
  121 LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDVVS 180
  181 EDMTPLFQTI VEKVSSPDAD ADGPFQMQIS QLDYNSYVGV IGVGRINRGS IKTNQQVSVI 240
  241 GADGKVRNGK MGQVLGYMGL ERTEVDVANA GDIVAITGLG ELKISDTVCA AGNVEAMPPL 300
  301 SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFAVSG 360
  361 RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPF ETLTVDVEEE HQGTVIEKLG 420
  421 IRKAEMKDMQ LDGKGRVRVD FVIPSRGLIG FQTEFLTATS GTGLIYHSFD HYGPHKGGDI 480
  481 GQRANGVLIS NATGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.0
Match:	1fnmA
Description:	Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [496-603]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTFALFGLQ DRGRLFIGHA AEVYEGQVVG IHARSNDLTV NCLKGKQLTN MRASGTDEAQ  60
   61 VLTTPITLTL EQALEFIDDD ELVEVTPKSI RVRKKHLTEN DRKRASRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.748	d.74.2	C-terminal domain of arginine repressor
View	Download	0.788	d.95.1	Glucose permease domain IIB
View	Download	0.778	d.95.1	Glucose permease domain IIB
View	Download	0.775	d.95.1	Glucose permease domain IIB
View	Download	0.770	d.95.1	Glucose permease domain IIB

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits