YRC Public Data Repository - Protein Structure Prediction

Protein:	AZOR_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AZOR_SHEON.

Description	E-value	Query Range	Subject Range
AZOR_SHELP - FMN-dependent NADH-azoreductase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=azoR PE=3 SV=...	177.0	[0..1]	[196..1]
AZOR_SHESR - FMN-dependent NADH-azoreductase OS=Shewanella sp. (strain MR-7) GN=azoR PE=3 SV=1 AZOR_SHESM - FMN-dependent NADH-azoreductase OS=Shewanella sp. (strain MR-4) GN=azoR PE=3 SV=1	177.0	[0..1]	[198..1]
AZOR_SHESA - FMN-dependent NADH-azoreductase OS=Shewanella sp. (strain ANA-3) GN=azoR PE=3 SV=1	177.0	[0..1]	[198..1]
AZOR2_PSEPF - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=azoR2 PE=3 SV=1	174.0	[0..1]	[197..1]
AZOR_PECAS - FMN-dependent NADH-azoreductase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=... AZOR_ERWCT - FMN-dependent NADH-azoreductase OS=Erwinia carotovora subsp. atroseptica GN=azoR PE=3 SV=3	174.0	[0..1]	[196..1]
AZOR2_PSEF5 - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=azoR2 P...	173.0	[0..1]	[197..1]
gi\|124499905, gi... - gi\|124529447\|ref\|ZP_01700451.1\| (Acyl-carrier-protein) phosphodiesterase [Escherichia coli B], gi\|12... EG12695 - NADH-azoreductase, FMN-dependent / NADH-azoreductase, FMN-dependent AZOR_ECOLC - FMN-dependent NADH-azoreductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=azoR P... gi\|238861880, gi... - gi\|238900640\|ref\|YP_002926436.1\| NADH-azoreductase, FMN-dependent [Escherichia coli BW2952], gi\|2388... AZOR_ECOLI - FMN-dependent NADH-azoreductase (EC 1.7.-.-) (FMN-dependent NADH-azo compound oxidoreductase) (Azo-d... gi\|75515001, gi\|... - gi\|75515001\|ref\|ZP_00737205.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli 536... AZOR_ECOHS - FMN-dependent NADH-azoreductase OS=Escherichia coli O9:H4 (strain HS) GN=azoR PE=3 SV=1 gi\|89108257, gi\|... - gi\|89108257\|ref\|AP_002037.1\| NADH-azoreductase, FMN-dependent [Escherichia coli str. K-12 substr. W3... EG12695 - NADH-azoreductase, FMN-dependent / NADH-azoreductase, FMN-dependent gi\|170081088, gi... - gi\|170081088\|ref\|YP_001730408.1\| NADH-azoreductase, FMN-dependent [Escherichia coli str. K-12 substr...	172.0	[0..1]	[196..1]
AZOR_SHEDO - FMN-dependent NADH-azoreductase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 1501...	172.0	[0..1]	[196..1]
gi\|194434299, gi... - gi\|83569239\|ref\|ZP_00920696.1\| COG1182: Acyl carrier protein phosphodiesterase [Shigella dysenteriae... gi\|187428721, gi... - gi\|75178645\|ref\|ZP_00698691.1\| COG1182: Acyl carrier protein phosphodiesterase [Shigella boydii BS51... gi\|192959582, gi... - gi\|75239960\|ref\|ZP_00723921.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli E11... AZOR_SHISS - FMN-dependent NADH-azoreductase OS=Shigella sonnei (strain Ss046) GN=azoR PE=3 SV=1 AZOR_ECO24 - FMN-dependent NADH-azoreductase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=azoR PE=3 SV... gi\|75212820, gi\|... - gi\|75212820\|ref\|ZP_00712818.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli B17... gi\|237705393, gi... - gi\|237705393\|ref\|ZP_04535874.1\| azoreductase [Escherichia sp. 3_2_53FAA], gi\|226900150\|gb\|EEH86409.1... AZOR_SHIBS - FMN-dependent NADH-azoreductase OS=Shigella boydii serotype 4 (strain Sb227) GN=azoR PE=3 SV=1 gi\|218365117, gi... - gi\|218558348\|ref\|YP_002391261.1\| azoreductase [Escherichia coli S88], gi\|218365117\|emb\|CAR02826.1\| N... gi\|218351685, gi... - gi\|218694953\|ref\|YP_002402620.1\| azoreductase [Escherichia coli 55989], gi\|218351685\|emb\|CAU97400.1\|... AZOR_ECOUT - FMN-dependent NADH-azoreductase OS=Escherichia coli (strain UTI89 / UPEC) GN=azoR PE=3 SV=1	171.0	[0..1]	[196..1]
gi\|194424440, gi... - gi\|83587760\|ref\|ZP_00926386.1\| COG1182: Acyl carrier protein phosphodiesterase [Escherichia coli 101...	171.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVLVLKSS ILGGYSQSAL LVDYLIGKWE KQGATITVRD LAGKDVLPMV DGEIASGLRG  60
   61 GAELTARQQE MLDLSNALVE ELKANDTIVI TAPMYNFNIP TQLKNWIDFV ARAGVTFTYT 120
  121 ENGPKGLVEG KRAVLITTRG GAHKDGPTDH MVPFLKTFLG FIGITDVDVV YAEALNMGPE 180
  181 ANQKGISEAK ASIDKLAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.30103
Match:	1v4bA
Description:	The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: