YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350844, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350844, gi|....

Description	E-value	Query Range	Subject Range
gi\|82401161, gi\|... - gi\|82500843\|ref\|ZP_00886237.1\| Rhodanese-like [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82...	117.0	[0..5]	[107..446]
gi\|77165474, gi\|... - gi\|77165474\|ref\|YP_343999.1\| metallo-beta-lactamase family protein [Nitrosococcus oceani ATCC 19707]...	115.0	[0..1]	[104..249]
gi\|53729577, gi\|... - gi\|71906251\|ref\|YP_283838.1\| rhodanese-like protein [Dechloromonas aromatica RCB], gi\|71845872\|gb\|AA...	113.0	[0..12]	[106..36]
gi\|53803358, gi\|... - gi\|53803358\|ref\|YP_114947.1\| rhodanese domain-containing protein [Methylococcus capsulatus str. Bath...	112.0	[0..1]	[106..29]
gi\|56420603, gi\|... - gi\|56420603\|ref\|YP_147921.1\| hypothetical protein GK2068 [Geobacillus kaustophilus HTA426], gi\|56380...	111.0	[0..6]	[102..25]
gi\|17231397, gi\|... - gi\|17231397\|ref\|NP_487945.1\| hypothetical protein alr3905 [Nostoc sp. PCC 7120], gi\|17133039\|dbj\|BAB... gi\|25322706 - pir\|\|AB2294 hypothetical protein alr3905 [imported] - Nostoc sp. (strain PCC 7120)	110.0	[0..3]	[107..1]
gi\|160878895, gi... - gi\|160878895\|ref\|YP_001557863.1\| rhodanese domain-containing protein [Clostridium phytofermentans IS...	109.0	[0..7]	[102..42]
gi\|68186322, gi\|... - gi\|91773522\|ref\|YP_566214.1\| rhodanese-like protein [Methanococcoides burtonii DSM 6242], gi\|9171253...	108.0	[0..8]	[106..40]
gi\|77975067, gi\|... - gi\|77975067\|ref\|ZP_00830604.1\| COG0607: Rhodanese-related sulfurtransferase [Yersinia frederiksenii ...	107.0	[0..6]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQSLLAKLS GSSNGEKCWQ LIEQGARVID VRSPEEFASG HLPQAINVPL PTLDQWLHQV  60
   61 ENKQHPFVLY CGAGIRAQKG CDILRANGFE CVVNGGSLKD LVCCQPNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1gmxA
Description:	Sulfurtransferase GlpE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.291319994167841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: