YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350823, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350823, gi|....

Description	E-value	Query Range	Subject Range
gi\|114049173, gi... - gi\|78690020\|ref\|ZP_00854673.1\| FAD-binding protein [Shewanella sp. MR-7], gi\|78510547\|gb\|EAP23916.1\|...	259.0	[0..1]	[436..1]
gi\|113968684, gi... - gi\|82495577\|ref\|ZP_00881152.1\| FAD-binding protein [Shewanella sp. MR-4], gi\|82406461\|gb\|EAP47126.1\|...	258.0	[0..1]	[436..1]
gi\|117918788, gi... - gi\|78685972\|ref\|ZP_00850745.1\| FAD-binding protein [Shewanella sp. ANA-3], gi\|78506287\|gb\|EAP19807.1...	256.0	[0..1]	[436..1]
gi\|126172585, gi... - gi\|68541194\|ref\|ZP_00580940.1\| Monooxygenase, FAD-binding [Shewanella baltica OS155], gi\|68521083\|gb...	231.0	[0..1]	[424..1]
gi\|120597121, gi... - gi\|82742648\|ref\|ZP_00905333.1\| FAD-binding protein [Shewanella sp. W3-18-1], gi\|82720004\|gb\|EAP54885...	230.0	[0..1]	[417..1]
gi\|113908038, gi... - gi\|160873462\|ref\|YP_001552778.1\| monooxygenase FAD-binding [Shewanella baltica OS195], gi\|160858984\|...	230.0	[0..1]	[424..1]
gi\|77810426, gi\|... - gi\|77814596\|ref\|ZP_00813854.1\| Monooxygenase, FAD-binding [Shewanella putrefaciens CN-32], gi\|778104...	230.0	[0..1]	[417..1]
gi\|69166266, gi\|... - gi\|69950121\|ref\|ZP_00638053.1\| Monooxygenase, FAD-binding [Shewanella frigidimarina NCIMB 400], gi\|6...	221.0	[0..5]	[417..2]
gi\|68517078, gi\|... - gi\|68545210\|ref\|ZP_00584761.1\| Monooxygenase, FAD-binding [Shewanella amazonensis SB2B], gi\|68517078...	218.0	[0..7]	[418..3]
gi\|63254402, gi\|... - gi\|66043695\|ref\|YP_233536.1\| monooxygenase, FAD-binding [Pseudomonas syringae pv. syringae B728a], g...	215.0	[0..9]	[419..1]

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Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTAASAT QSYSLCVDVA IIGAGPSGSI AASLLHKQGK RVVVLERQHF PRFSIGESLL  60
   61 PCCMQFIEEA GMLEALNAAG FQYKNGAAFR RNGVYTTFDF TDKFTPGPGT TFQVQRGNFD 120
  121 KLLADTAASF GVEIRYGETV EAIDLTAAPR LTVRNEQGEL YQVEAKYVLD ASGFGRVLPR 180
  181 LLDLETPSSL PTRSAIFTHV EDNISDPNFD RNKILISVHP LHQDIWYWLI PFSNGRCSLG 240
  241 VVAEPQLLAR LEGDLEQQLL TIVKEEPGLN ALLANAKVAQ PCATLKGYSA NVSRLATDKF 300
  301 ALLGNAGEFL DPVFSSGVTI AMQSASMAAK CVTKQLNGGT VDWPTEYSAP LMQGVNTFRT 360
  361 YVQAWYDGRF QDVIFYEDPN PKIKQMICSI LAGYAWDVQN PFVKESERRL NMVVELCRQD 420
  421 AELITAEPAI SELAEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2qa2A
Description:	No description for 2qa2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits