YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350811, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350811, gi|....

Description	E-value	Query Range	Subject Range
gi\|50755725 - gi\|50755725\|ref\|XP_414872.1\| PREDICTED: similar to Acyl carrier protein, mitochondrial precursor (AC...	96.0	[0..3]	[83..117]
gi\|58580505, gi\|... - gi\|58580505\|ref\|YP_199521.1\| acyl carrier protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	94.0	[0..2]	[82..63]
gi\|73958737 - gi\|73958737\|ref\|XP_536932.2\| PREDICTED: similar to Acyl carrier protein, mitochondrial precursor (AC...	90.0	[0..3]	[83..91]
gi\|221481756 - gi\|221481756\|gb\|EEE20132.1\| acyl carrier protein, putative [Toxoplasma gondii GT1] gi\|237832401, gi... - gi\|237832401\|ref\|XP_002365498.1\| acyl carrier protein [Toxoplasma gondii ME49], gi\|211963162\|gb\|EEA9... gi\|3746415, gi\|3... - gi\|3746421\|gb\|AAC63956.1\| acyl carrier protein precursor [Toxoplasma gondii], gi\|3746415\|gb\|AAC63953... gi\|221502190 - gi\|221502190\|gb\|EEE27928.1\| acyl carrier protein, putative [Toxoplasma gondii VEG]	89.0	[0..3]	[83..106]
gi\|111226160, gi... - gi\|111226160\|ref\|YP_716954.1\| acyl carrier protein (partial match) [Frankia alni ACN14a], gi\|1111536...	89.0	[0..2]	[82..186]
gi\|69134791, gi\|... - gi\|69298444\|ref\|ZP_00620724.1\| Acyl carrier protein (ACP) [Silicibacter sp. TM1040], gi\|69134791\|gb\|...	88.0	[0..3]	[81..78]
gi\|6459729, gi\|1... - gi\|6459729\|gb\|AAF11495.1\|AE002033_3 acyl carrier protein [Deinococcus radiodurans R1], gi\|15806940\|r... gi\|7471077 - gi\|7471077\|pir\|\|F75333 acyl carrier protein DR1942 [similarity] - Deinococcus radiodurans (strain R1...	87.0	[0..1]	[83..35]
gi\|12844653 - gi\|12844653\|dbj\|BAB26446.1\| unnamed protein product [Mus musculus]	86.0	[0..3]	[83..75]
gi\|109462818, gi... - gi\|27679694\|ref\|XP_215044.1\| PREDICTED: similar to Acyl carrier protein, mitochondrial precursor (AC...	86.0	[0..3]	[83..75]
gi\|109127916 - gi\|109127916\|ref\|XP_001095226.1\| PREDICTED: NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex...	86.0	[0..3]	[83..75]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHNEIKQL IIDCLDLEDV SIDDIETDAP LFGDGLGLDS IDALELGLAI KKKFDVKIEA  60
   61 NSDSTKAHFY SVASLAKFIE SQRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2dnwA
Description:	No description for 2dnwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits