YRC Public Data Repository - Protein Structure Prediction

Protein:	ILVC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ILVC_SHEON.

Description	E-value	Query Range	Subject Range
gi\|91074870, gi\|... - gi\|91213296\|ref\|YP_543282.1\| ketol-acid reductoisomerase [Escherichia coli UTI89], gi\|91074870\|gb\|AB... gi\|237702784, gi... - gi\|237702784\|ref\|ZP_04533265.1\| ketol-acid reductoisomerase [Escherichia sp. 3_2_53FAA], gi\|22690295...	565.0	[0..1]	[492..51]
gi\|227888641, gi... - gi\|227888641\|ref\|ZP_04006446.1\| Ketol-acid reductoisomerase [Escherichia coli 83972], gi\|227834480\|g... gi\|26250514, gi\|... - gi\|26250514\|ref\|NP_756554.1\| ketol-acid reductoisomerase [Escherichia coli CFT073], gi\|26110944\|gb\|A...	564.0	[0..1]	[492..51]
gi\|110807535, gi... - gi\|110807535\|ref\|YP_691054.1\| ketol-acid reductoisomerase [Shigella flexneri 5 str. 8401], gi\|110617...	564.0	[0..1]	[492..46]
ILVC_PASMU - Ketol-acid reductoisomerase OS=Pasteurella multocida (strain Pm70) GN=ilvC PE=3 SV=1 ILVC_PASMU - Ketol-acid reductoisomerase OS=Pasteurella multocida GN=ilvC PE=3 SV=1	563.0	[0..1]	[489..1]
gi\|83569044, gi\|... - gi\|83569044\|ref\|ZP_00920506.1\| COG0059: Ketol-acid reductoisomerase [Shigella dysenteriae 1012], gi\|...	561.0	[0..1]	[492..1]
ILVC_VIBVU - Ketol-acid reductoisomerase OS=Vibrio vulnificus GN=ilvC PE=3 SV=1 ILVC_VIBVY - Ketol-acid reductoisomerase OS=Vibrio vulnificus (strain YJ016) GN=ilvC PE=3 SV=1 ILVC_VIBVU - Ketol-acid reductoisomerase OS=Vibrio vulnificus (strain CMCP6) GN=ilvC PE=3 SV=1	561.0	[0..1]	[491..1]
gi\|217326533, gi... - gi\|217326533\|ref\|ZP_03442617.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. TW14588],... gi\|208808131, gi... - gi\|208808131\|ref\|ZP_03250468.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4206], ... gi\|15833962, gi\|... - gi\|15833962\|ref\|NP_312735.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208814177, gi... - gi\|208814177\|ref\|ZP_03255506.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4045], ... gi\|208739819, gi... - gi\|208819696\|ref\|ZP_03260016.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4042], ... ILVC_ECO5E - Ketol-acid reductoisomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ilvC PE=3 SV=1 gi\|189001474, gi... - gi\|189001474\|gb\|EDU70460.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|189373454, gi... - gi\|189373454\|gb\|EDU91870.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|189376790, gi... - gi\|189376790\|gb\|EDU95206.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|195938063 - gi\|195938063\|ref\|ZP_03083445.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4024] gi\|168753668, gi... - gi\|189359024\|gb\|EDU77443.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|168764148, gi... - gi\|189365789\|gb\|EDU84205.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|168768052, gi... - gi\|189362694\|gb\|EDU81113.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168775678, gi... - gi\|187768844\|gb\|EDU32688.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|209753566, gi... - pir\|\|E86063 ketol-acid reductoisomerase [imported] - Escherichia coli (strain O157:H7, substrain ED... gi\|254595173, gi... - gi\|254795773\|ref\|YP_003080610.1\| ketol-acid reductoisomerase, NAD(P)-binding [Escherichia coli O157:... gi\|188014261, gi... - gi\|188014261\|gb\|EDU52383.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|12518635, gi\|... - gi\|15804365\|ref\|NP_290405.1\| ketol-acid reductoisomerase [Escherichia coli O157:H7 EDL933], gi\|12518... ILVC_ECO57 - Ketol-acid reductoisomerase OS=Escherichia coli O157:H7 GN=ilvC PE=3 SV=2	561.0	[0..1]	[492..1]
ILVC_SHIDS - Ketol-acid reductoisomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ilvC PE=3 SV=1	560.0	[0..1]	[492..1]
ILVC_ECOSE - Ketol-acid reductoisomerase OS=Escherichia coli (strain SE11) GN=ilvC PE=3 SV=1 ILVC_ECO81 - Ketol-acid reductoisomerase OS=Escherichia coli O81 (strain ED1a) GN=ilvC PE=3 SV=1 ILVC_ECOL6 - Ketol-acid reductoisomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ilvC P... ILVC_ECOSM - Ketol-acid reductoisomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ilvC PE=3 SV=1 gi\|190905353, gi... - gi\|75236530\|ref\|ZP_00720620.1\| COG0059: Ketol-acid reductoisomerase [Escherichia coli F11], gi\|19117... gi\|75234071, gi\|... - gi\|75234071\|ref\|ZP_00718484.1\| COG0059: Ketol-acid reductoisomerase [Escherichia coli E110019], gi\|1... gi\|194412198, gi... - gi\|75209003\|ref\|ZP_00709267.1\| COG0059: Ketol-acid reductoisomerase [Escherichia coli B171], gi\|1944... ILVC_ECOLU - Ketol-acid reductoisomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ilvC PE=3 SV=... ILVC_ECOL6 - Ketol-acid reductoisomerase OS=Escherichia coli O6 GN=ilvC PE=3 SV=3 ILVC_ECO24 - Ketol-acid reductoisomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ilvC PE=3 SV=1 gi\|193066116, gi... - gi\|75255781\|ref\|ZP_00727535.1\| COG0059: Ketol-acid reductoisomerase [Escherichia coli E22], gi\|19306... ILVC_ECOL5 - Ketol-acid reductoisomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ilvC PE=3 SV=1	560.0	[0..1]	[492..1]

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Predicted Domain #1

Region A:
Residues: [1-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANYFNSLNL RQQLAQLGQC RFMDRSEFSD GCNYIKDWNI VILGCGAQGL NQGLNMRDSG  60
   61 LNIAYALRPE AIAQKRASWQ KATDNGFKVG TFEELIPSAD LVLNLTPDKQ HSNVVSAVMP 120
  121 LMKQGATLSY SHGFNIVEEG MQIRPDITVI MVAPKCPGTE VREEYKRGFG VPTLIAVHPE 180
  181 NDPNGDGLDI AKAYASATGG DRAGVLQSSF IAEVKSDLMG EQTILCGMLQ TGAILGYEKM 240
  241 VADGVEPGYA AKLIQQGWET VTEALKHGGI TNMMDRLSNP AKIKAFEIAE DLKDILQPLF 300
  301 EKHMDDIISG EFSRTMMQDW ANDDANLLRW RAETGETGFE NAPVSSEHID EQTYFDKGIF 360
  361 LVAMIKAGVE LAFDTMVSAG IVEESAYYES LHETPLIANT IARKRLYEMN VVISDTAEYG 420
  421 CYLFNHAAVP LLRDYVNAMS PEYLGAGLKD SSNSVDNLQL IAINDAIRHT AVEYVGAELR 480
  481 GYMTDMKSIV GA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	160.0
Match:	1yrlA
Description:	Escherichia coli ketol-acid reductoisomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits