YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350783, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350783, gi|....

Description	E-value	Query Range	Subject Range
gi\|134298160, gi... - gi\|88944098\|ref\|ZP_01147431.1\| Acetolactate synthase, small subunit [Desulfotomaculum reducens MI-1]...	130.0	[0..1]	[84..1]
gi\|7436727 - gi\|7436727\|pir\|\|S74358 acetolactate synthase ilvN - Synechocystis sp. (strain PCC 6803) gi\|16331478, gi\|... - gi\|16331478\|ref\|NP_442206.1\| acetolactate synthase 3 regulatory subunit [Synechocystis sp. PCC 6803]...	130.0	[0..1]	[84..17]
gi\|86556992, gi\|... - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-2-3B'a... gi\|86608450 - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto...	130.0	[0..1]	[84..1]
gi\|67921725, gi\|... - gi\|67921725\|ref\|ZP_00515242.1\| Acetolactate synthase, small subunit [Crocosphaera watsonii WH 8501],...	130.0	[0..1]	[84..1]
gi\|23127611, gi\|... - gi\|23127611\|ref\|ZP_00109476.1\| COG0440: Acetolactate synthase, small (regulatory) subunit [Nostoc pu...	128.0	[0..1]	[84..1]
gi\|86606770 - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto... gi\|86606770, gi\|... - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-3-3Ab]...	128.0	[0..1]	[84..1]
gi\|83591078, gi\|... - gi\|83591078\|ref\|YP_431087.1\| acetolactate synthase 3 regulatory subunit [Moorella thermoacetica ATCC...	127.0	[0..1]	[84..1]
gi\|68213813, gi\|... - gi\|91776472\|ref\|YP_546228.1\| acetolactate synthase 3 regulatory subunit [Methylobacillus flagellatus...	127.0	[0..1]	[84..1]
gi\|39997008, gi\|... - gi\|39997008\|ref\|NP_952959.1\| acetolactate synthase 3 regulatory subunit [Geobacter sulfurreducens PC...	126.0	[0..1]	[84..1]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHSLKLTVQ QRPEVIERVL RVTRHRGFTV TQMQMRMNDD TSLSLDMEVD SERAIELLSN  60
   61 QLNKLIDVTQ CMVLLPLNLQ QQKVHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2pc6A
Description:	No description for 2pc6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits