YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375794, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	804 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375794, gi|....

Description	E-value	Query Range	Subject Range
gi\|89110214, gi\|... - gi\|89110214\|ref\|AP_003994.1\| adenylate cyclase [Escherichia coli str. K-12 substr. W3110], gi\|856762... gi\|238902883, gi... - gi\|238902883\|ref\|YP_002928679.1\| adenylate cyclase [Escherichia coli BW2952], gi\|238859933\|gb\|ACR619... gi\|254039018, gi... - gi\|254039018\|ref\|ZP_04873069.1\| adenylate cyclase [Escherichia sp. 1_1_43], gi\|226838709\|gb\|EEH70737... EG10170 - adenylate cyclase / Adenylate cyclase EG10170 - adenylate cyclase / Adenylate cyclase gi\|188495545, gi... - gi\|188495545\|ref\|ZP_03002815.1\| adenylate cyclase, class I [Escherichia coli 53638], gi\|188490744\|gb... CYAA_ECOLI - Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase) - Escherichia coli	1291.0	[0..12]	[794..13]
gi\|170022171, gi... - gi\|170022171\|ref\|YP_001727125.1\| adenylate cyclase [Escherichia coli ATCC 8739], gi\|169757099\|gb\|ACA... gi\|187731691, gi... - gi\|187731691\|ref\|YP_001882499.1\| adenylate cyclase, class I [Shigella boydii CDC 3083-94], gi\|187428... gi\|192926660, gi... - gi\|193065693\|ref\|ZP_03046758.1\| adenylate cyclase, class I [Escherichia coli E22], gi\|192926660\|gb\|E... gi\|192958671, gi... - gi\|193068051\|ref\|ZP_03049016.1\| adenylate cyclase, class I [Escherichia coli E110019], gi\|192958671\|... gi\|168775644, gi... - gi\|187768909\|gb\|EDU32753.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168780704, gi... - gi\|189001401\|gb\|EDU70387.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|168786643, gi... - gi\|189373311\|gb\|EDU91727.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189376665, gi... - gi\|189376665\|gb\|EDU95081.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|188015428, gi... - gi\|188015428\|gb\|EDU53550.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168753702, gi... - gi\|189359031\|gb\|EDU77450.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168763930, gi... - gi\|189365987\|gb\|EDU84403.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|189362577, gi... - gi\|189362577\|gb\|EDU80996.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|15833990, gi\|... - gi\|15833990\|ref\|NP_312763.1\| adenylate cyclase [Escherichia coli O157:H7 str. Sakai], gi\|13364212\|db... gi\|209396473, gi... - gi\|209396473\|ref\|YP_002273322.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4115], ... gi\|209921278, gi... - gi\|209921278\|ref\|YP_002295362.1\| adenylate cyclase [Escherichia coli SE11], gi\|209914537\|dbj\|BAG7961... gi\|74314317, gi\|... - gi\|74314317\|ref\|YP_312736.1\| adenylate cyclase [Shigella sonnei Ss046], gi\|73857794\|gb\|AAZ90501.1\| a... gi\|217324973, gi... - gi\|217324973\|ref\|ZP_03441057.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. TW14588], ... gi\|124530456, gi... - gi\|124530456\|ref\|ZP_01701114.1\| putative adenylate cyclase [Escherichia coli B], gi\|124499222\|gb\|EAY... gi\|81247568, gi\|... - gi\|82546157\|ref\|YP_410104.1\| adenylate cyclase [Shigella boydii Sb227], gi\|81247568\|gb\|ABB68276.1\| a... gi\|218354252, gi... - gi\|218697520\|ref\|YP_002405187.1\| adenylate cyclase [Escherichia coli 55989], gi\|218354252\|emb\|CAV009... gi\|195938094 - gi\|195938094\|ref\|ZP_03083476.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4024] gi\|208728386, gi... - gi\|208808585\|ref\|ZP_03250922.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4206], g... gi\|208812263, gi... - gi\|208812263\|ref\|ZP_03253592.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4045], g... gi\|208740087, gi... - gi\|208819964\|ref\|ZP_03260284.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4042], g... gi\|209753302, gi... - pir\|\|H91220 adenylate cyclase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)... gi\|157068959, gi... - gi\|157163279\|ref\|YP_001460597.1\| adenylate cyclase [Escherichia coli HS], gi\|157068959\|gb\|ABV08214.1... gi\|254595202, gi... - gi\|254795802\|ref\|YP_003080639.1\| adenylate cyclase [Escherichia coli O157:H7 str. TW14359], gi\|25459... CYAA_ECO57 - Adenylate cyclase OS=Escherichia coli O157:H7 GN=cyaA PE=3 SV=1	1290.0	[0..12]	[794..13]
gi\|152960628, gi... - gi\|77630746\|ref\|ZP_00793332.1\| COG3072: Adenylate cyclase [Yersinia pseudotuberculosis IP 31758], gi...	1289.0	[0..12]	[796..13]
gi\|110617054, gi... - gi\|110807506\|ref\|YP_691026.1\| adenylate cyclase [Shigella flexneri 5 str. 8401], gi\|110617054\|gb\|ABF...	1289.0	[0..12]	[794..13]
gi\|581058, gi\|581057 - gi\|581058\|emb\|CAA47280.1\| adenylate cyclase [Escherichia coli], gi\|581057\|emb\|CAA25817.1\| adenylate ...	1289.0	[0..12]	[794..13]
gi\|191174263, gi... - gi\|191174263\|ref\|ZP_03035772.1\| adenylate cyclase, class I [Escherichia coli F11], gi\|190905446\|gb\|E... gi\|227888611, gi... - gi\|227888611\|ref\|ZP_04006416.1\| adenylate cyclase [Escherichia coli 83972], gi\|227834450\|gb\|EEJ44916... CYAA_ECOL6 - Adenylate cyclase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyaA PE=3 SV=1 gi\|229560205 - gi\|229560205\|ref\|YP_671860.2\| adenylate cyclase [Escherichia coli 536] CYAA_ECOL6 - Adenylate cyclase OS=Escherichia coli O6 GN=cyaA PE=3 SV=1	1288.0	[0..12]	[803..13]
gi\|115349462, gi... - gi\|218930851\|ref\|YP_002348726.1\| adenylate cyclase [Yersinia pestis CO92], gi\|16123983\|ref\|NP_407296... gi\|149289402, gi... - gi\|153997096\|ref\|ZP_02022229.1\| adenylate cyclase [Yersinia pestis CA88-4125], gi\|149289402\|gb\|EDM39... gi\|22124297, gi\|... - gi\|22124297\|ref\|NP_667720.1\| adenylate cyclase [Yersinia pestis KIM], gi\|21957068\|gb\|AAM83971.1\|AE01... CYAA_YERPE - Adenylate cyclase OS=Yersinia pestis GN=cya PE=3 SV=2 gi\|145600715, gi... - gi\|145600715\|ref\|YP_001164791.1\| adenylate cyclase [Yersinia pestis Pestoides F], gi\|145212411\|gb\|AB... gi\|229686882, gi... - gi\|229900102\|ref\|ZP_04515239.1\| adenylate cyclase [Yersinia pestis biovar Orientalis str. India 195]... gi\|229839539, gi... - gi\|229839539\|ref\|ZP_04459698.1\| adenylate cyclase [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|162353447, gi... - gi\|77633322\|ref\|ZP_00795459.1\| COG3072: Adenylate cyclase [Yersinia pestis Angola], gi\|162420632\|ref... gi\|166213605, gi... - gi\|166213605\|ref\|ZP_02239640.1\| adenylate cyclase, class I [Yersinia pestis biovar Antiqua str. B420... gi\|166961067, gi... - gi\|167420938\|ref\|ZP_02312691.1\| adenylate cyclase, class I [Yersinia pestis biovar Orientalis str. M... gi\|167054749, gi... - gi\|167426230\|ref\|ZP_02317983.1\| adenylate cyclase, class I [Yersinia pestis biovar Mediaevalis str. ... gi\|165939139, gi... - gi\|89104219\|ref\|ZP_01176769.1\| COG3072: Adenylate cyclase [Yersinia pestis biovar Orientalis str. IP... gi\|170026226, gi... - gi\|170026226\|ref\|YP_001722731.1\| adenylate cyclase [Yersinia pseudotuberculosis YPIII], gi\|169752760... gi\|186893539, gi... - gi\|186893539\|ref\|YP_001870651.1\| adenylate cyclase [Yersinia pseudotuberculosis PB1/+], gi\|186696565... gi\|229900452, gi... - gi\|229900452\|ref\|ZP_04515581.1\| adenylate cyclase [Yersinia pestis Nepal516], gi\|229682471\|gb\|EEO785... gi\|165921792, gi... - gi\|165926268\|ref\|ZP_02222100.1\| adenylate cyclase, class I [Yersinia pestis biovar Orientalis str. F... gi\|166011647, gi... - gi\|166011647\|ref\|ZP_02232545.1\| adenylate cyclase, class I [Yersinia pestis biovar Antiqua str. E197...	1288.0	[0..12]	[796..13]
gi\|218367638, gi... - gi\|218560869\|ref\|YP_002393782.1\| adenylate cyclase [Escherichia coli S88], gi\|218367638\|emb\|CAR05421... gi\|91074901, gi\|... - gi\|91213327\|ref\|YP_543313.1\| adenylate cyclase [Escherichia coli UTI89], gi\|91074901\|gb\|ABE09782.1\| ... gi\|229775950 - gi\|229775950\|ref\|YP_859386.2\| adenylate cyclase [Escherichia coli APEC O1] gi\|226902984, gi... - gi\|237702813\|ref\|ZP_04533294.1\| adenylate cyclase [Escherichia sp. 3_2_53FAA], gi\|226902984\|gb\|EEH89...	1288.0	[0..12]	[803..13]
gi\|12518673, gi\|... - gi\|15804394\|ref\|NP_290434.1\| adenylate cyclase [Escherichia coli O157:H7 EDL933], gi\|12518673\|gb\|AAG... gi\|25292228 - gi\|25292228\|pir\|\|B86067 adenylate cyclase [imported] - Escherichia coli (strain O157:H7, substrain E...	1288.0	[0..12]	[794..13]
gi\|51587823, gi\|... - gi\|51594541\|ref\|YP_068732.1\| adenylate cyclase [Yersinia pseudotuberculosis IP 32953], gi\|51587823\|e... Q66FZ9\|Q66FZ9_YERPS - Adenylate cyclase - Yersinia pseudotuberculosis	1288.0	[0..12]	[796..13]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQQGHFPDI AERLNQVRIA RALALLSPLQ KHLFRLIPFL IQQNSVQYPG FVDPNTPCGI  60
   61 YGYKAGSLEA QACDVFKLPF IATEVDFYAF EGVYAMGST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASFGQNAKSD VDVWLVHHAD LCDDDLALIK LKTERLTAWF AEYQFEVNFY LVHPLQFCGD  60
   61 MSQRTVCQSS MAHEHSGSTQ HWLLLEEFYR SQIRLAGKII AWWPDAKLNP ELLSLGNVHE 120
  121 LPASEYFGAS LWQLYKGLNK PHKALIKVLL LEAYASEYPH SQLLCDRLWQ KTLAGDF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [277-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STANDAYYAI YEVIEAYLLK QNDSRRLEIV RRCFYLKCGV FLSLSNQGKD WRYAKMQKLV  60
   61 QEWQWPNSLI TTLDDCEHWH SGQLNWFNEQ LNELLLASYQ TLLRFASTHE LNEGLKIEEL 120
  121 GMLTRKLHTY FSQDEDQI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [415-635]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKLNLLWSRS VAEAEVTMVS STKENQYYLY RQGPKPLNLL GDSAICKGKS PSALMIWACL  60
   61 NGVSTPETKW YEFGQSKVKS QRLTDASKRL LNFIDHDWRV SKLDLCQPWH FRKLIFILNL 120
  121 DCDPTIGWRG QEMMVDVMNA NVFSLGRKQE NMLGALDAIC LNSWGEWQCH RFEGETAVLQ 180
  181 ALAFVTPGLR RATHPVDMDV ISCSQRLRPQ LKLAVKNLLK Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [636-804]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVRLCQQVQQ SSTLVQPLQI SHTRYGIFFN PLGMAYQDLS DAKSFYQQLA RSHLVQLPRP  60
   61 ELGDDPFSSM PNIIQNFAAK GAIQYFLRQR TDSLDVFILD EENQLSHYVQ SGSDMSELVN 120
  121 KVSHHYVFDE FYASKARFNI PQFFHLVRVA GELTVRPFGV DMNNANVEF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits