YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350726, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350726, gi|....

Description	E-value	Query Range	Subject Range
gi\|91075674, gi\|... - gi\|91214100\|ref\|YP_544086.1\| purine nucleoside phosphorylase [Escherichia coli UTI89], gi\|91075674\|g... gi\|115515866, gi... - gi\|117626742\|ref\|YP_860065.1\| purine nucleoside phosphorylase [Escherichia coli APEC O1], gi\|1155158...	202.0	[0..1]	[240..19]
gi\|227885127, gi... - gi\|227885127\|ref\|ZP_04002932.1\| purine-nucleoside phosphorylase [Escherichia coli 83972], gi\|2278379... gi\|26111707, gi\|... - gi\|26251274\|ref\|NP_757314.1\| purine nucleoside phosphorylase [Escherichia coli CFT073], gi\|26111707\|...	202.0	[0..4]	[240..22]
DEOD_THETN - Purine nucleoside phosphorylase deoD-type OS=Thermoanaerobacter tengcongensis GN=deoD PE=3 SV=1 DEOD_CALS4 - Purine nucleoside phosphorylase DeoD-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...	201.0	[0..1]	[239..1]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	201.0	[0..4]	[240..3]
gi\|242258488, gi... - gi\|242258488\|ref\|ZP_04803284.1\| purine nucleoside phosphorylase [Thermoanaerobacter sp. X513], gi\|24... gi\|241902447, gi... - gi\|241902447\|ref\|ZP_04787181.1\| purine nucleoside phosphorylase [Thermoanaerobacter brockii subsp. f... DEOD_THEPX - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter sp. (strain X514) GN=deoD PE=3 SV=1 DEOD_THEP3 - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 ...	201.0	[0..1]	[239..1]
DEOD_ECOLI - (P0ABP8) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1) (PNP) (Inosine phosphorylase) DEOD_ECO57 - (P0ABP9) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1) (PNP) gi\|1633416\|pdb\|1... - Chain A, Purine Nucleoside Phosphorylase, Chain C, Purine Nucleoside Phosphorylase, Chain D, Purine ...	201.0	[0..4]	[240..2]
gi\|188014904, gi... - gi\|188014904\|gb\|EDU53026.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4113], ... gi\|168756804, gi... - gi\|189356061\|gb\|EDU74480.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4401], ... gi\|168762738, gi... - gi\|189366978\|gb\|EDU85394.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4501], ... DEOD_ECOLI - Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1) (PNP) (Inosine phosphorylase) - Escherichia c... gi\|189364163, gi... - gi\|189364163\|gb\|EDU82582.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4486], ... DEOD_ECO57 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O157:H7 GN=deoD PE=1 SV=2 gi\|168776636, gi... - gi\|187768014\|gb\|EDU31858.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4196], ... EG10222 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase / Purine nucleoside ... gi\|189000743, gi... - gi\|189000743\|gb\|EDU69729.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4076], ... gi\|15804956, gi\|... - gi\|15804956\|ref\|NP_290998.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 EDL933], gi\|1... gi\|189375140, gi... - gi\|189375140\|gb\|EDU93556.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC869], g... gi\|168797958, gi... - gi\|189379510\|gb\|EDU97926.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC508], g... gi\|89111092, gi\|... - gi\|89111092\|ref\|AP_004872.1\| purine-nucleoside phosphorylase [Escherichia coli str. K-12 substr. W31... gi\|217321811, gi... - gi\|217325590\|ref\|ZP_03441674.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. TW145... DEOD_ESCF3 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 /... gi\|75234547, gi\|... - gi\|75234547\|ref\|ZP_00718888.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli E110019], ... DEOD_ECO8A - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O8 (strain IAI1) GN=deoD PE=3 SV=1 gi\|192926720, gi... - gi\|75256296\|ref\|ZP_00727968.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli E22], gi\|1... DEOD_ECO45 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=deoD PE... DEOD_ECO55 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain 55989 / EAEC) GN=deoD PE=3 SV=... DEOD_ECOLU - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN... gi\|15834597, gi\|... - gi\|15834597\|ref\|NP_313370.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. Sakai], ... DEOD_ECODH - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain K12 / DH10B) GN=deoD PE=3 SV=1 EG10222 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase / Purine nucleoside ... gi\|194439314, gi... - gi\|83585292\|ref\|ZP_00923940.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli 101-1], gi... DEOD_ECOSM - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=deoD PE=3 ... gi\|195937655 - gi\|195937655\|ref\|ZP_03083037.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC402... gi\|208726726, gi... - gi\|208806925\|ref\|ZP_03249262.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC420... DEOD_ECOHS - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O9:H4 (strain HS) GN=deoD PE=3 SV=1 gi\|208735384, gi... - gi\|208814107\|ref\|ZP_03255436.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC404... gi\|75209588, gi\|... - gi\|75209588\|ref\|ZP_00709806.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli B171], gi\|... gi\|208740486, gi... - gi\|208820363\|ref\|ZP_03260683.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC404... DEOD_SHIB3 - Purine nucleoside phosphorylase DeoD-type OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512... DEOD_ECO5E - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=deoD... DEOD_ECO24 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=de... DEOD_ECOSE - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain SE11) GN=deoD PE=3 SV=1 DEOD_SHISS - Purine nucleoside phosphorylase DeoD-type OS=Shigella sonnei (strain Ss046) GN=deoD PE=3 SV=1 DEOD_ECOBW - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=deoD... gi\|254595780, gi... - gi\|254796380\|ref\|YP_003081217.1\| purine-nucleoside phosphorylase [Escherichia coli O157:H7 str. TW14... DEOD_SHIBS - Purine nucleoside phosphorylase DeoD-type OS=Shigella boydii serotype 4 (strain Sb227) GN=deoD PE=3 ...	200.0	[0..4]	[240..3]
DEOD_SHIDS - Purine nucleoside phosphorylase DeoD-type OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=deoD ...	200.0	[0..4]	[240..3]
DEOD_ECO27 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=de... gi\|253980370, gi... - gi\|254291061\|ref\|YP_003056811.1\| purine nucleoside phosphorylase [Escherichia coli BL21(DE3)], gi\|25... DEOD_ECO81 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O81 (strain ED1a) GN=deoD PE=3 SV=1 gi\|251787633, gi... - gi\|251787633\|ref\|YP_003001937.1\| hypothetical protein B21_04226 [Escherichia coli BL21], gi\|24237990... gi\|124499244, gi... - gi\|124530353\|ref\|ZP_01701039.1\| purine nucleoside phosphorylase [Escherichia coli B], gi\|124499244\|g... DEOD_ECOL6 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|254164310, gi... - gi\|254164310\|ref\|YP_003047420.1\| purine nucleoside phosphorylase [Escherichia coli B str. REL606], g... gi\|162138297 - gi\|162138297\|ref\|YP_544086.2\| purine nucleoside phosphorylase [Escherichia coli UTI89] gi\|254037396, gi... - gi\|254037396\|ref\|ZP_04871473.1\| purine nucleoside phosphorylase [Escherichia sp. 1_1_43], gi\|2268405... DEOD_ECOLC - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)... DEOD_ECO7I - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=deoD P... DEOD_ECOL6 - Purine nucleoside phosphorylase deoD-type OS=Escherichia coli O6 GN=deoD PE=3 SV=2 DEOD_SHIF8 - Purine nucleoside phosphorylase DeoD-type OS=Shigella flexneri serotype 5b (strain 8401) GN=deoD PE=... gi\|56384162, gi\|... - gi\|56480611\|ref\|NP_710124.2\| purine nucleoside phosphorylase [Shigella flexneri 2a str. 301], gi\|563... gi\|75515575, gi\|... - gi\|75515575\|ref\|ZP_00737732.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli 53638], gi... gi\|190906521, gi... - gi\|75239553\|ref\|ZP_00723523.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli F11], gi\|1... DEOD_ECOL5 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=deoD... gi\|75229444, gi\|... - gi\|75229444\|ref\|ZP_00715994.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli B7A], gi\|1... gi\|30043886, gi\|... - gi\|30065622\|ref\|NP_839793.1\| purine nucleoside phosphorylase [Shigella flexneri 2a str. 2457T], gi\|3... sp\|B7UR12\|DEOD_ECO27 - Purine nucleoside phosphorylase deoD-type OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=de... gi\|237704121, gi... - gi\|237704121\|ref\|ZP_04534602.1\| purine nucleoside phosphorylase [Escherichia sp. 3_2_53FAA], gi\|2269... DEOD_SHIFL - Purine nucleoside phosphorylase DeoD-type OS=Shigella flexneri GN=deoD PE=3 SV=4	200.0	[0..4]	[240..3]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQPHILVA PHQVSEKAVV CGEPNRVNRI VAHLTDVESL ADNREFRLMR GRYGDTIVTV  60
   61 CSTGIGAPSA IIALEELYQC GVKQLIRIGS AGALQPQIAI GDVIIAEAAV RDDGGSASYV 120
  121 KPGFPAYANH RLVGKLQAYC AQHHICAHSG VVRSHDSFYT DQEQDLCHYW HRQGVLGADM 180
  181 ETAALFTVGR LRQLEVAAIL TNVVLFDQDV KAGVNDYVAS SKASAQGEQH AILAALNALC 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1tgvA
Description:	Structure of E. coli Uridine Phosphorylase complexed with 5-Fluorouridine and sulfate
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits