YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350724, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350724, gi|....

Description	E-value	Query Range	Subject Range
gi\|221312679 - gi\|221312679\|ref\|ZP_03594484.1\| hypothetical protein BsubsN3_02954 [Bacillus subtilis subsp. subtili... YDEQ_BACSU - Uncharacterized NAD(P)H oxidoreductase YdeQ OS=Bacillus subtilis (strain 168) GN=ydeQ PE=3 SV=1 gi\|221317602 - gi\|221317602\|ref\|ZP_03598896.1\| hypothetical protein BsubsJ_02913 [Bacillus subtilis subsp. subtilis... gi\|221321878 - gi\|221321878\|ref\|ZP_03603172.1\| hypothetical protein BsubsS_02984 [Bacillus subtilis subsp. subtilis... YDEQ_BACSU - Uncharacterized NAD(P)H oxidoreductase ydeQ OS=Bacillus subtilis GN=ydeQ PE=3 SV=1	146.0	[0..1]	[171..4]
gi\|86166378, gi\|... - gi\|87118744\|ref\|ZP_01074643.1\| NADP(H) oxidoreductase [Marinomonas sp. MED121], gi\|86166378\|gb\|EAQ67...	144.0	[0..1]	[178..1]
gi\|52081993, gi\|... - gi\|52787380\|ref\|YP_093209.1\| YwrO [Bacillus licheniformis ATCC 14580], gi\|52349882\|gb\|AAU42516.1\| Yw... gi\|40316488 - gi\|40316488\|dbj\|BAD06206.1\| NAD(P)H-FMN oxidoreductase [Bacillus subtilis]	143.0	[0..1]	[168..1]
gi\|59481692, gi\|... - gi\|59713444\|ref\|YP_206219.1\| modulator of glutathione-dependent potassium efflux system [Vibrio fisc...	142.0	[0..2]	[173..7]
gi\|171989909, gi... - gi\|68053681\|ref\|ZP_00537846.1\| NAD(P)H dehydrogenase (quinone) [Exiguobacterium sibiricum 255-15], g...	141.0	[0..2]	[171..3]
gi\|78360393, gi\|... - gi\|78367532\|ref\|ZP_00837799.1\| NAD(P)H dehydrogenase (quinone) [Shewanella sp. PV-4], gi\|78360393\|gb...	140.0	[0..3]	[173..8]
gi\|82720908, gi\|... - gi\|82741748\|ref\|ZP_00904462.1\| NAD(P)H dehydrogenase (quinone) [Shewanella sp. W3-18-1], gi\|82720908... gi\|146294571, gi... - gi\|77815544\|ref\|ZP_00814772.1\| NAD(P)H dehydrogenase (quinone) [Shewanella putrefaciens CN-32], gi\|7...	139.0	[0..1]	[182..1]
gi\|18253309 - gi\|18253309\|gb\|AAL66420.1\|AF373598_2 nitroreductase [Bacillus amyloliquefaciens]	138.0	[0..1]	[170..1]
gi\|35211906, gi\|... - gi\|37520911\|ref\|NP_924288.1\| NADP(H) oxidoreductase [Gloeobacter violaceus PCC 7421], gi\|35211906\|db...	138.0	[0..2]	[180..6]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILVLNGHP NLTQSVANAS ILALEAEQPG WHINSVAQFD GDTATEQRQL LDADVIVVQF  60
   61 PLYWSTYPAV LKHWIDEVFT YGFAFGPNGS QLQGKPVLFS ITAGATEDSY SETGFNFLPF 120
  121 NAYQQAYEHP FRAAAVEIID TIISFEMNST AAEGGNKSNT LSLAKNHAER VIAAVNSYKD 180
  181 HSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2bzsA
Description:	Binding of anti-cancer prodrug CB1954 to the activating enzyme NQO2 revealed by the crystal strucutre of their complex.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits