YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375763, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375763, gi|....

Description	E-value	Query Range	Subject Range
gi\|220932006, gi... - gi\|89209975\|ref\|ZP_01188368.1\| TrkA-N:NADP oxidoreductase, coenzyme F420-dependent:TrkA-C:6-phosphog...	138.0	[0..1]	[211..1]
gi\|78044977, gi\|... - gi\|78044977\|ref\|YP_360403.1\| potassium uptake protein KtrA [Carboxydothermus hydrogenoformans Z-2901...	138.0	[0..2]	[211..4]
gi\|186685052, gi... - gi\|23129256\|ref\|ZP_00111088.1\| COG1226: Kef-type K+ transport systems, predicted NAD-binding compone...	137.0	[0..3]	[213..102]
gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac... gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| VIC family potassium channel protein [Synechococcus sp. JA-3-3Ab], gi\|8...	136.0	[0..3]	[213..123]
gi\|110674230, gi... - gi\|110799583\|ref\|YP_696570.1\| putative potassium uptake protein [Clostridium perfringens ATCC 13124]... gi\|168214921, gi... - gi\|170713651\|gb\|EDT25833.1\| putative potassium uptake protein [Clostridium perfringens CPE str. F496... gi\|18145554, gi\|... - gi\|18310872\|ref\|NP_562806.1\| potassium uptake system protein [Clostridium perfringens str. 13], gi\|1... gi\|168215516, gi... - gi\|182382286\|gb\|EDT79765.1\| putative potassium uptake protein [Clostridium perfringens NCTC 8239], g... gi\|169343708, gi... - gi\|169343708\|ref\|ZP_02864707.1\| putative potassium uptake protein [Clostridium perfringens C str. JG... gi\|177908563, gi... - gi\|182626126\|ref\|ZP_02953886.1\| putative potassium uptake protein [Clostridium perfringens D str. JG... gi\|170662413, gi... - gi\|170662413\|gb\|EDT15096.1\| putative potassium uptake protein [Clostridium perfringens E str. JGS198... gi\|168211664, gi... - gi\|170710367\|gb\|EDT22549.1\| putative potassium uptake protein [Clostridium perfringens B str. ATCC 3...	136.0	[0..2]	[213..4]
gi\|86609264, gi\|... - gi\|86609264\|ref\|YP_478026.1\| VIC family potassium channel protein [Synechococcus sp. JA-2-3B'a(2-13)... gi\|86609264 - gi\|86609264\|ref\|YP_478026.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac...	135.0	[0..3]	[213..123]
gi\|28204321, gi\|... - gi\|28211879\|ref\|NP_782823.1\| trk system potassium uptake protein trkA [Clostridium tetani E88], gi\|2...	135.0	[0..2]	[212..4]
gi\|75703660, gi\|... - gi\|75909935\|ref\|YP_324231.1\| hypothetical protein Ava_3731 [Anabaena variabilis ATCC 29413], gi\|7570...	135.0	[0..3]	[213..102]
gi\|110802535, gi... - gi\|110802535\|ref\|YP_699168.1\| potassium uptake protein [Clostridium perfringens SM101], gi\|110683036...	134.0	[0..2]	[213..4]
gi\|17130425, gi\|... - gi\|17228574\|ref\|NP_485122.1\| hypothetical protein all1079 [Nostoc sp. PCC 7120], gi\|17130425\|dbj\|BAB... gi\|25314198 - pir\|\|AD1941 hypothetical protein all1079 [imported] - Nostoc sp. (strain PCC 7120)	134.0	[0..3]	[213..102]

Back

Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHFTVIGLG RFGIAASLEL IHLGHTVTGV ERDPKLAEKY VDELTQTVVC DSTDENALRE  60
   61 LDLDNSEAVL VAIGEDMQSS LLCILALKNL GVKQIWVKAS TKAHHTIVSK LGVDRIIHPE 120
  121 EEMGIRVAQA LNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2hmsA
Description:	No description for 2hmsA was found.

Predicted Domain #2

Region A:
Residues: [134-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMVNNYLSLG SGLYVVEVHI RNKLHNSPIS DILKGSIKPI LVKRGTQVYS SVNADFRLYE  60
   61 NDVFLLCGTR AELKSIATRL M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.39794
Match:	1vctA
Description:	Crystal structure of putative potassium channel related protein from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits