YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375752, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375752, gi|....

Description	E-value	Query Range	Subject Range
gi\|10880734 - gi\|10880734\|gb\|AAG24368.1\|AF263433_1 transposase [Xanthomonas axonopodis pv. dieffenbachiae]	108.0	[0..1]	[88..1]
gi\|82702818, gi\|... - gi\|82702818\|ref\|YP_412384.1\| transposase IS3/IS911 [Nitrosospira multiformis ATCC 25196], gi\|8241088...	107.0	[0..1]	[88..1]
gi\|82944981, gi\|... - gi\|83310140\|ref\|YP_420404.1\| hypothetical protein amb1041 [Magnetospirillum magneticum AMB-1], gi\|82...	102.0	[0..1]	[87..1]
gi\|192286708, gi... - gi\|192292959\|ref\|YP_001993564.1\| transposase IS3/IS911 family protein [Rhodopseudomonas palustris TI... RPA2982, RPA0771, RPA3837, RPA3579 - RPA2982 possible insertion element ISR1 hypothetical 10 KD protein A3 3378641:3378907 reverse MW:994...	101.0	[0..1]	[88..1]
gi\|58038340, gi\|... - gi\|58038340\|ref\|YP_190309.1\| transposase [Gluconobacter oxydans 621H], gi\|58038336\|ref\|YP_190305.1\| ...	100.0	[0..1]	[87..1]
gi\|83855152, gi\|... - gi\|83855152\|ref\|ZP_00948682.1\| possible insertion element protein [Sulfitobacter sp. NAS-14.1], gi\|8...	100.0	[0..1]	[88..1]
gi\|116255008, gi... - gi\|116255344\|ref\|YP_771177.1\| putative transposon/insertion element protein [Rhizobium leguminosarum... gi\|241203215, gi... - gi\|241203215\|ref\|YP_002974311.1\| transposase IS3/IS911 family protein [Rhizobium leguminosarum bv. t...	99.0	[0..1]	[88..1]
gi\|83371554, gi\|... - gi\|83371554\|ref\|ZP_00916345.1\| hypothetical protein Rsph17025DRAFT_2504 [Rhodobacter sphaeroides ATC...	99.0	[0..1]	[86..1]
gi\|71039319, gi\|... - gi\|71066334\|ref\|YP_265061.1\| IS3 family transposase [Psychrobacter arcticus 273-4], gi\|71039319\|gb\|A...	99.0	[0..1]	[88..1]
gi\|14024175, gi\|... - gi\|14024175\|dbj\|BAB50779.1\| insertion element ISR1 hypothetical 10 kD protein A3 [Mesorhizobium loti...	98.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSKFTDSQ IMAILKQAEA GTPVPELCRE HGMSSATFYK WRAKFGGMDA SLMARLKELE  60
   61 AENARLKKMY AEERLKADVI QEAMAKKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2jn6A
Description:	No description for 2jn6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits