YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|26249247, gi\|... - gi\|26249247\|ref\|NP_755287.1\| N-acetylglutamate synthase [Escherichia coli CFT073], gi\|26109654\|gb\|AA...	301.0	[0..4]	[445..23]
gi\|91073787, gi\|... - gi\|91212213\|ref\|YP_542199.1\| amino-acid acetyltransferase [Escherichia coli UTI89], gi\|91073787\|gb\|A...	300.0	[0..4]	[445..23]
gi\|113887314, gi... - gi\|78691023\|ref\|ZP_00855655.1\| Amino-acid N-acetyltransferase (ArgA) [Shewanella sp. MR-7], gi\|78509...	300.0	[0..1]	[445..1]
gi\|78686876, gi\|... - gi\|78686876\|ref\|ZP_00851637.1\| Amino-acid N-acetyltransferase (ArgA) [Shewanella sp. ANA-3], gi\|7850...	300.0	[0..1]	[445..1]
gi\|3128247 - gi\|3128247\|gb\|AAC23443.1\| N-acetylglutamate synthetase [Escherichia coli]	300.0	[0..5]	[445..2]
gi\|110616303, gi... - gi\|110806755\|ref\|YP_690275.1\| N-acetylglutamate synthase [Shigella flexneri 5 str. 8401], gi\|1106163...	300.0	[0..5]	[445..2]
gi\|73856863, gi\|... - gi\|74313386\|ref\|YP_311805.1\| N-acetylglutamate synthase [Shigella sonnei Ss046], gi\|73856863\|gb\|AAZ8...	300.0	[0..5]	[445..2]
gi\|82406244, gi\|... - gi\|82495652\|ref\|ZP_00881226.1\| Amino-acid N-acetyltransferase (ArgA) [Shewanella sp. MR-4], gi\|82406...	299.0	[0..1]	[445..1]
gi\|110642985, gi... - gi\|110642985\|ref\|YP_670715.1\| N-acetylglutamate synthase [Escherichia coli 536], gi\|110344577\|gb\|ABG... gi\|190908521, gi... - gi\|75241773\|ref\|ZP_00725592.1\| COG0548: Acetylglutamate kinase [Escherichia coli F11], gi\|191171221\|...	299.0	[0..5]	[445..2]

Back

Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCKQRVRTT ELVDGFRHSA PYVNAHRGKT FVVMLGGEAL AQNQFRGILN DVALLHSLGI  60
   61 KVVLVYGARP QIDAALAANG IEPAYHDGVR ITDEDSLKVI KQVAGALQFD ITARLSMSLS 120
  121 NTPMQGAQIN LVSGNFVIAQ PLGVDNGVDF CLSGKVRRID AQGLKRQLDN HCIVLMGPIA 180
  181 ASVTGESFNL TAEEIATQVA IKLKADKMIG FSSQNGILDR NGDVIAELMP NDAQKILNKL 240
  241 AEQGSACIGT MAFLKASIDA CRNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	2jj4A
Description:	No description for 2jj4A was found.

Predicted Domain #2

Region A:
Residues: [265-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRCHLVSYL DDGALLQELF SREGIGTQIV TESAERLRRA SISDIGGILN LIRPLEEQGI  60
   61 LVRRSREQLE IEIEQFMLIE RDGLVIGCAA LYPFEEDNAG EFACLVVHPD YRDADRGSLL 120
  121 LKNIIGQARS RGYSRLFALT TRSIHWFLEH GFVIEDVDAL PQKKKQLYNY QRRSKILALD 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1tiqA
Description:	Crystal Structure of an Acetyltransferase (PaiA) in complex with CoA and DTT from Bacillus subtilis, Northeast Structural Genomics Target SR64.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acyltransferase activity	3.86250210827155	bayes_pls_golite062009
N-acetyltransferase activity	3.63407851380637	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.81274397387444	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.76197390450126	bayes_pls_golite062009
acyltransferase activity	2.70847810129258	bayes_pls_golite062009
catalytic activity	2.34977492703662	bayes_pls_golite062009
transferase activity	1.92514630957121	bayes_pls_golite062009
acetyltransferase activity	1.84361284541304	bayes_pls_golite062009
arginine N-succinyltransferase activity	1.09794747911669	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: