YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350642, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350642, gi|....

Description	E-value	Query Range	Subject Range
gi\|78686896, gi\|... - gi\|78686896\|ref\|ZP_00851657.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	357.0	[0..1]	[460..1]
gi\|114045892, gi... - gi\|78691043\|ref\|ZP_00855675.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	356.0	[0..1]	[460..1]
gi\|82406224, gi\|... - gi\|82495632\|ref\|ZP_00881206.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	355.0	[0..1]	[460..1]
gi\|113950519, gi... - gi\|160873534\|ref\|YP_001552850.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl...	354.0	[0..1]	[460..1]
gi\|125995855, gi... - gi\|68543492\|ref\|ZP_00583195.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	354.0	[0..1]	[460..1]
gi\|82742148, gi\|... - gi\|82742148\|ref\|ZP_00904850.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-... gi\|77814550, gi\|... - gi\|77814550\|ref\|ZP_00813808.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	352.0	[0..1]	[460..1]
gi\|11761331 - gi\|11761331\|dbj\|BAB19198.1\| MurF [Shewanella violacea]	347.0	[0..1]	[460..1]
gi\|126639680, gi... - gi\|78368236\|ref\|ZP_00838477.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	333.0	[0..1]	[459..1]
gi\|69165042, gi\|... - gi\|69951278\|ref\|ZP_00639019.1\| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-...	333.0	[0..1]	[460..1]
gi\|221318640 - gi\|221318640\|ref\|ZP_03599934.1\| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [... gi\|221313717 - gi\|221313717\|ref\|ZP_03595522.1\| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [... MURE_BACSU - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus subtilis GN=murE P... MURE_BACSU - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus subtilis (strain 1... gi\|221322914 - gi\|221322914\|ref\|ZP_03604208.1\| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [...	332.0	[0..21]	[459..21]

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Predicted Domain #1

Region A:
Residues: [1-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPISLKALS QHLGAHRVGD DVTVQALSSD SRKIGPATLF VALKGDRFDG HDFAATAIEN  60
   61 GAIALLVERE LAFDIPQLIV ADCQKAMGAI GAYVRDQVNP ICVALTGSNG KTSVKEMIAT 120
  121 ILSAKHQVLY TAGNFNNEIG VPLTLLRLTP EDKYGVFELG ANHKGEIDYT SGLVRPHVAL 180
  181 VNNVGSAHLE GFGSQAGVAQ AKSEIYNHLQ EDGTAIINAD DAFADVMRVK AKHYKQLSFS 240
  241 QQEGAAKRQI DVIATGHKAN SDGCYRFMLN YAGESCEVVL PLAGRHQVSN ALAAASVCIA 300
  301 LGLNLTEIAE GLSQLTPVKG RMQPTQLGRV RLIDDSYNAN PVSVGAAIAW LKEISENRCL 360
  361 VLGDLGELGD NAPLLHAELG QLARQQGIDA LFCTGTLTQH TSHAFGAEHH DSVATLVEKL 420
  421 IKHINQLPGQ VTVLVKGSRS AAMERVVDGL TVAFGRGELV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.522879
Match:	1gg4A
Description:	UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits