YRC Public Data Repository - Protein Structure Prediction

Protein:	MRAY_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRAY_SHEON.

Description	E-value	Query Range	Subject Range
MRAY_PECAS - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Pectobacterium atrosepticum (strain SCRI 1043 /... gi\|227113989 - gi\|227113989\|ref\|ZP_03827645.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Pectobacterium ca... MRAY_ERWCT - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Erwinia carotovora subsp. atroseptica GN=mraY P... gi\|227327094 - gi\|227327094\|ref\|ZP_03831118.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Pectobacterium ca...	341.0	[0..1]	[360..1]
gi\|86148537, gi\|... - gi\|86148537\|ref\|ZP_01066824.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Vibrio sp. MED222]... MRAY_VIBTL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Vibrio tasmaniensis (strain LGP32) GN=mraY PE=3...	339.0	[0..1]	[360..1]
MRAY_PHOLL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photorhabdus luminescens subsp. laumondii (stra... MRAY_PHOLL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photorhabdus luminescens subsp. laumondii GN=mr...	339.0	[0..1]	[360..1]
MRAY_PHOPR - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photobacterium profundum (strain SS9) GN=mraY P... MRAY_PHOPR - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photobacterium profundum GN=mraY PE=3 SV=1	338.0	[0..1]	[360..1]
MRAY_VIBVY - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Vibrio vulnificus (strain YJ016) GN=mraY PE=3 S...	338.0	[0..1]	[360..1]
gi\|90413037, gi\|... - gi\|90413037\|ref\|ZP_01221035.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Photobacterium pro...	338.0	[0..1]	[360..1]
MRAY_VIBVU - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Vibrio vulnificus (strain CMCP6) GN=mraY PE=3 S... MRAY_VIBVU - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Vibrio vulnificus GN=mraY PE=3 SV=1	338.0	[0..1]	[360..1]
gi\|77976103 - gi\|77976103\|ref\|ZP_00831636.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	337.0	[0..1]	[360..1]
gi\|84394437, gi\|... - gi\|84394437\|ref\|ZP_00993153.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Vibrio splendidus ...	337.0	[0..1]	[360..1]
gi\|77958238 - gi\|77958238\|ref\|ZP_00822275.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac... gi\|77962095 - gi\|77962095\|ref\|ZP_00825920.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	336.0	[0..1]	[360..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVYLAEYLT RFHTGFNVFS YVTFRAILGL LTALMFSLWW GPKLIERLQL MQIGQVVRND  60
   61 GPESHFSKRG T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMGGLLILG AIFLSVLLWG DLGSRYVWVM LFVLGSFGMI GFIDDYRKVV RKDTKGLIAR  60
   61 WKYILQSLAA LIIAFFLYTT AANPGETQLV VPFFKDVMPQ LGAVFIVLAY FTIVGSSNAV 120
  121 NLTDGLDGLA IMPTVMVAAA FALIAYLSGH AQFANYLHIP HLPGSGELVI VCTAIVGAGL 180
  181 GFLWFNTYPA QVFMGDVGSL SLGAALGAIA VLVRQEILLV IMGGVFVMET VSVILQVGSY 240
  241 KLRGQRIFRM APIHHHYELK GWPEPRVIVR FWIISIFLVL LGLATLKLR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.022276
Match:	PF00953.12
Description:	No description for PF00953.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits