YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375693, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375693, gi|....

Description	E-value	Query Range	Subject Range
gi\|119768843, gi... - gi\|68546484\|ref\|ZP_00586031.1\| Porphobilinogen synthase [Shewanella amazonensis SB2B], gi\|68515898\|g...	581.0	[0..1]	[336..1]
gi\|119944101, gi... - gi\|119944101\|ref\|YP_941781.1\| delta-aminolevulinic acid dehydratase [Psychromonas ingrahamii 37], gi...	580.0	[0..4]	[336..3]
gi\|78366185, gi\|... - gi\|78366185\|ref\|ZP_00836467.1\| Porphobilinogen synthase [Shewanella sp. PV-4], gi\|78361773\|gb\|EAP035...	576.0	[0..1]	[334..1]
gi\|91791816, gi\|... - gi\|91791816\|ref\|YP_561467.1\| delta-aminolevulinic acid dehydratase [Shewanella denitrificans OS217],...	575.0	[0..1]	[336..1]
gi\|59710660, gi\|... - gi\|59710660\|ref\|YP_203436.1\| delta-aminolevulinic acid dehydratase [Vibrio fischeri ES114], gi\|59478...	571.0	[0..4]	[336..5]
gi\|254851489, gi... - gi\|254851489\|ref\|ZP_05240839.1\| delta-aminolevulinic acid dehydratase [Vibrio cholerae MO10], gi\|254... gi\|254292249, gi... - gi\|254292249\|ref\|ZP_04963010.1\| delta-aminolevulinic acid dehydratase [Vibrio cholerae AM-19226], gi... gi\|153831355, gi... - gi\|153831355\|ref\|ZP_01984022.1\| delta-aminolevulinic acid dehydratase [Vibrio cholerae 623-39], gi\|1... gi\|227011893, gi... - gi\|75828053\|ref\|ZP_00757488.1\| COG0113: Delta-aminolevulinic acid dehydratase [Vibrio cholerae O395]... gi\|121730181, gi... - gi\|75814176\|ref\|ZP_00744804.1\| COG0113: Delta-aminolevulinic acid dehydratase [Vibrio cholerae V52],... gi\|227080341, gi... - gi\|227080341\|ref\|YP_002808892.1\| delta-aminolevulinic acid dehydratase [Vibrio cholerae M66-2], gi\|2... gi\|229508385, gi... - gi\|229508385\|ref\|ZP_04397889.1\| porphobilinogen synthase [Vibrio cholerae BX 330286], gi\|229354658\|g... gi\|229354051, gi... - gi\|229508934\|ref\|ZP_04398424.1\| porphobilinogen synthase [Vibrio cholerae B33], gi\|229354051\|gb\|EEO1... gi\|229515859, gi... - gi\|229515859\|ref\|ZP_04405317.1\| porphobilinogen synthase [Vibrio cholerae TMA 21], gi\|229347122\|gb\|E... gi\|15640137, gi\|... - gi\|9654504\|gb\|AAF93283.1\| delta-aminolevulinic acid dehydratase [Vibrio cholerae O1 biovar El Tor st... gi\|229346111, gi... - gi\|229517048\|ref\|ZP_04406494.1\| porphobilinogen synthase [Vibrio cholerae RC9], gi\|229346111\|gb\|EEO1... gi\|11269326 - pir\|\|G82363 delta-aminolevulinic acid dehydratase VC0105 [imported] - Vibrio cholerae (strain N16961... gi\|229525003, gi... - gi\|229525003\|ref\|ZP_04414408.1\| porphobilinogen synthase [Vibrio cholerae bv. albensis VL426], gi\|22... gi\|229606659, gi... - gi\|229606659\|ref\|YP_002877307.1\| porphobilinogen synthase [Vibrio cholerae MJ-1236], gi\|229369314\|gb...	570.0	[0..4]	[334..5]
gi\|91224942, gi\|... - gi\|91224942\|ref\|ZP_01260201.1\| delta-aminolevulinic acid dehydratase [Vibrio alginolyticus 12G01], g... gi\|116185716, gi... - gi\|75856477\|ref\|ZP_00764105.1\| COG0113: Delta-aminolevulinic acid dehydratase [Vibrio sp. Ex25], gi\|...	570.0	[0..4]	[335..6]
gi\|53803043, gi\|... - gi\|53803043\|ref\|YP_115188.1\| delta-aminolevulinic acid dehydratase [Methylococcus capsulatus str. Ba...	569.0	[0..5]	[333..6]
gi\|28805086 - gi\|28805086\|dbj\|BAC58367.1\| delta-aminolevulinic acid dehydratase [Vibrio parahaemolyticus RIMD 2210... gi\|28896878, gi\|... - gi\|28896878\|ref\|NP_796483.1\| delta-aminolevulinic acid dehydratase [Vibrio parahaemolyticus RIMD 221...	568.0	[0..4]	[335..5]
gi\|48767818, gi\|... - gi\|94312217\|ref\|YP_585427.1\| delta-aminolevulinic acid dehydratase [Ralstonia metallidurans CH34], g...	568.0	[0..6]	[333..2]

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Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIITSAFPQ RRMRRMRKHD FSRRLMAENH LTVNDLIYPM FVLEGSNRSE KVASMPGVER  60
   61 YSIDLLLKEA EELVELGIPL IALFPVTPSE KKSLMAEEAY NADALVQRAV RELKKAFPQL 120
  121 GIMTDVALDP FTTHGQDGII DETGYILNDI TTEILVKQAL SHAEAGADIV APSDMMDGRI 180
  181 GAIRQALEAA GHVNTQIMAY SAKYSSSYYG PFRDAVGSAG NLKGGNKHSY QMDPANSDEA 240
  241 LHEVALDIQE GADMVMVKPG MPYLDIVHRV KTELAVPTFA YQVSGEYAMH MAAIQNGWLA 300
  301 EKAIVMESLL CFKRAGADGI LTYFAKRAAQ WLKEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	1w5oA
Description:	Stepwise introduction of zinc binding site into porphobilinogen synthase of Pseudomonas aeruginosa (mutantions A129C, D131C and D139C)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits