YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375641, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375641, gi|....

Description	E-value	Query Range	Subject Range
gi\|78511606, gi\|... - gi\|78688923\|ref\|ZP_00853589.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	253.0	[0..1]	[601..7]
gi\|82497435, gi\|... - gi\|82497435\|ref\|ZP_00882984.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	250.0	[0..1]	[599..7]
gi\|126176052, gi... - gi\|68541962\|ref\|ZP_00581700.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	245.0	[0..3]	[601..5]
gi\|160873592, gi... - gi\|160873592\|ref\|YP_001552908.1\| histidine kinase [Shewanella baltica OS195], gi\|160859114\|gb\|ABX476...	242.0	[0..3]	[601..5]
gi\|117614460, gi... - gi\|78687002\|ref\|ZP_00851761.1\| ATP-binding region, ATPase-like [Shewanella sp. ANA-3], gi\|78505287\|g...	241.0	[0..11]	[601..2]
gi\|37680407, gi\|... - gi\|37680407\|ref\|NP_935016.1\| putative tetrathionate reductase complex, sensory transduction histidin...	240.0	[0..1]	[599..5]
gi\|46915107, gi\|... - gi\|54301687\|ref\|YP_131680.1\| histidine kinase [Photobacterium profundum SS9], gi\|46915107\|emb\|CAG218...	235.0	[0..7]	[599..36]
gi\|82720164, gi\|... - gi\|82742493\|ref\|ZP_00905184.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	232.0	[0..24]	[600..24]
gi\|145563332, gi... - gi\|77813332\|ref\|ZP_00812610.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	231.0	[0..24]	[600..24]
gi\|75856163, gi\|... - gi\|75856163\|ref\|ZP_00763796.1\| COG0642: Signal transduction histidine kinase [Vibrio sp. Ex25], gi\|1...	228.0	[0..1]	[588..1]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWCKTILV SCILSMIMLN LSYADEDLPV HEFKVGVLAN HGVLQAKQRW QPMMDYLSEN  60
   61 VPNSRFEVVP LDFDGMRSQL LSNELQFIVT NPGQYLHLSN NFPLSWLATM KSRKHQGSTF 120
  121 TIGATIIVRA DSPIRSLQDL RGKNVVASDP QALGGYQAAM GLLHKMGYLP EQFFGQVRFL 180
  181 GFPLAPLIYQ VRDGSADAAI APFCTLEEMI ETGLINKADY RVIHPTNPPG YDCEVSTQLY 240
  241 PNWSFAAADT VSPWITMQIT RALFDLPADH VAAITADTLG WTAPVSQLKV IELFKELQLQ 300
  301 GASPPLYQTV YKWMEKNKEW GGVLLLIFIV STIYHLWLEY KFRQKSEF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.06
Match:	2de2A
Description:	No description for 2de2A was found.

Predicted Domain #2

Region A:
Residues: [349-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVSTERQLKD KALQLERLQS AAILGEIGAG LAHELNQPIA AITQYSEGAM IQLERLGHDN  60
   61 PELYDILGKI NAQSIRAGAV VHRIRGLLKR RQAKAESLNV TLVVKEALAL LRRELDRAGV 120
  121 QVTVEVEGHP YELMGDNVGL SQMWVNLVKN SLDALEACKD NRSRQLRIEI YYLPNEIKVL 180
  181 VIDNGEGLQG QASELMASFA STKDTGLGLG LAICKDVVSR HHGSIEIENC KQSTQTPLPW 240
  241 QQGCVVTVIL PRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits