YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350501, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350501, gi|....

Description	E-value	Query Range	Subject Range
gi\|77380634, gi\|... - gi\|77456631\|ref\|YP_346136.1\| malic enzyme, NAD-binding [Pseudomonas fluorescens Pf0-1], gi\|77380634\|...	559.0	[0..1]	[412..29]
gi\|28872247, gi\|... - gi\|28872247\|ref\|NP_794866.1\| malic enzyme family protein [Pseudomonas syringae pv. tomato str. DC300... gi\|213969440, gi... - gi\|213969440\|ref\|ZP_03397577.1\| malic enzyme family protein [Pseudomonas syringae pv. tomato T1], gi... tr\|Q87V07\|Q87V07... - Malic enzyme family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_5134 PE=3 SV...	558.0	[0..1]	[412..1]
gi\|77974595, gi\|... - gi\|77974595\|ref\|ZP_00830134.1\| COG0281: Malic enzyme [Yersinia frederiksenii ATCC 33641], gi\|2387880...	557.0	[0..2]	[414..3]
gi\|66043668, gi\|... - gi\|66043668\|ref\|YP_233509.1\| malate dehydrogenase [Pseudomonas syringae pv. syringae B728a], gi\|6325...	556.0	[0..1]	[412..1]
gi\|78222846, gi\|... - gi\|78222846\|ref\|YP_384593.1\| malic enzyme [Geobacter metallireducens GS-15], gi\|78194101\|gb\|ABB31868...	556.0	[0..1]	[414..1]
gi\|39996800, gi\|... - gi\|39996800\|ref\|NP_952751.1\| malic enzyme [Geobacter sulfurreducens PCA], gi\|39983688\|gb\|AAR35078.1\|...	556.0	[0..1]	[414..1]
gi\|82716760, gi\|... - gi\|82736117\|ref\|ZP_00898977.1\| malic enzyme [Pseudomonas putida F1], gi\|82716760\|gb\|EAP51814.1\| mali...	555.0	[0..1]	[412..4]
gi\|24986870, gi\|... - gi\|26991761\|ref\|NP_747186.1\| malic enzyme [Pseudomonas putida KT2440], gi\|24986870\|gb\|AAN70650.1\|AE0... tr\|I7BYX1\|I7BYX1... - Malate dehydrogenase OS=Pseudomonas putida (strain DOT-T1E) GN=maeB PE=3 SV=1	555.0	[0..1]	[412..1]
gi\|71554327, gi\|... - gi\|71733774\|ref\|YP_272691.1\| NADP-dependent malic enzyme [Pseudomonas syringae pv. phaseolicola 1448...	555.0	[0..1]	[412..1]
gi\|238799203, gi... - gi\|77960159\|ref\|ZP_00824047.1\| COG0281: Malic enzyme [Yersinia mollaretii ATCC 43969], gi\|238799203\|...	553.0	[0..2]	[414..3]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIRQQALD YHEFPVPGKT AVCLTKPAET SHDLALAYSP GVAEPVREIA ANPENAYRYT  60
   61 NKGNTVAVIS NGTAILGLGN LGPLASKPVM EGKALLFKHF ANIDSTDIEV THNTAQEFIN 120
  121 TVAAIAGTFG GINLEDIKAP ECFVIERELI ARCNVPVFHD DQHGTAIVTA AGMINALEIQ 180
  181 GKLISDAIFV CMGAGAAAIA CMTMLVKCGA NRANIYMLDT KGVIHSGRTD LNEYKALFAN 240
  241 ETDKRTLQDV IKGADVFLGL SGPNVIGAEE VAMMADKPVI FACSNPDPEI KPELAHATRS 300
  301 DLIMGTGRSD YPNQVNNVLC FPFIFRGALD VRASCINDEM KIAAVHAIAE LAKEAVPASV 360
  361 LKAYPKVSSL SFGSEYVLPK PMDPRLLPRV ARAVAKAAID SGVATITTLP KYAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	1ww8A
Description:	No description for 1ww8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits