YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350499, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	631 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350499, gi|....

Description	E-value	Query Range	Subject Range
gi\|89519310 - gi\|89519310\|gb\|ABD75787.1\| sensory box/GGDEF family protein [uncultured bacterium]	485.0	[0..82]	[631..306]
gi\|78363780, gi\|... - gi\|78485494\|ref\|YP_391419.1\| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2],...	483.0	[0..78]	[631..900]
gi\|77918947, gi\|... - gi\|77918947\|ref\|YP_356762.1\| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus DSM 23...	479.0	[0..77]	[631..672]
gi\|48859207, gi\|... - gi\|67875521\|ref\|ZP_00504817.1\| PAS:GGDEF [Clostridium thermocellum ATCC 27405], gi\|67850552\|gb\|EAM46...	477.0	[0..83]	[631..288]
gi\|148262949, gi... - gi\|88936481\|ref\|ZP_01142089.1\| PAS:GGDEF [Geobacter uraniumreducens Rf4], gi\|88916750\|gb\|EAR35961.1\|...	476.0	[0..81]	[630..134]
gi\|221563411, gi... - gi\|222054122\|ref\|YP_002536484.1\| response regulator receiver modulated diguanylate cyclase/phosphodi...	475.0	[0..81]	[631..134]
gi\|83310313, gi\|... - gi\|83310313\|ref\|YP_420577.1\| signal transduction protein [Magnetospirillum magneticum AMB-1], gi\|829...	475.0	[0..25]	[631..252]
gi\|95133648, gi\|... - gi\|95930396\|ref\|ZP_01313133.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfu...	475.0	[0..7]	[631..276]
gi\|114332895, gi... - gi\|69949915\|ref\|ZP_00637879.1\| PAS:GGDEF [Shewanella frigidimarina NCIMB 400], gi\|69166539\|gb\|EAN755...	474.0	[0..55]	[630..890]
gi\|24371939, gi\|... - gi\|24371939\|ref\|NP_715981.1\| sensory box protein [Shewanella oneidensis MR-1], gi\|24345777\|gb\|AAN534... SO0341 - sensory box protein	470.0	[0..86]	[631..951]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTKLTSFW LMSLAAIAFV FLLCAMMSFV QLTYKFQQQK VAELETLLIE HYHTQPDWEL  60
   61 ESWLPPMLLA FNAVEFRLTM KSEVLFAYQG NVQTQNPMVY THLLDPQSGL SMTLSLPQPF 120
  121 DHYSISWYEL LILGVGLLAV IALVRFGHIW LSQQLDGIEE LAQRSRLILQ GKHEQALATP 180
  181 GNGKPRLINR ALTKLLEELQ DAHKERGRFD KFIRSNTFLD AQTRIGNRLF LNNRLDALSH 240
  241 DQGMVAHGVI YLLEMDDLDF IQQAKGEGAV KDLLHATVNG INSILQSLPN SIFARRTHNQ 300
  301 FAIVVPHVSL IEADQLASKL LKVCLSQPLP DGVDNRDNFY HLGCAYFTAG DNVNQLLDEA 360
  361 DMALRAAQLQ GNSNWFMYDK G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.154902
Match:	1w25A
Description:	Response regulator PleD in complex with c-diGMP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	0.0928619295989472	bayes_pls_golite062009
DNA binding	0.0743796794876224	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [382-631]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIDEEFAKGS VRWRSFLENA LVQRRFYPFS QPIMDSDGVE HHKEIFTRAR DNQGALVRAT  60
   61 LFIPMANKCG LMPQIERQMI ERVLVLLGQE QHKGQVYSVN LSLDTLMSRA FTHWLKTTLL 120
  121 EYRHLTPQLI FEVSEDIVVQ HQDKLQPKLD MISKMGARLC VDHVGQQVVG TYYIRECHFD 180
  181 MIKLHRSIVR HIHLRPENQL FIRSLIGGLY RTEVLVSAEG VEVFEEWQTL QILGVGMAQG 240
  241 MYFSDPVELQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.30103
Match:	2r6oA
Description:	No description for 2r6oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: