YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375595, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375595, gi|....

Description	E-value	Query Range	Subject Range
gi\|94805, gi\|151066 - pir\|\|B35384 pilC protein - Pseudomonas aeruginosa, gi\|151066\|gb\|AAA25733.1\| pilin biogenesis protei...	422.0	[0..3]	[403..10]
gi\|68213835, gi\|... - gi\|91776494\|ref\|YP_546250.1\| type II secretion system protein [Methylobacillus flagellatus KT], gi\|9...	410.0	[0..3]	[402..10]
gi\|77461042, gi\|... - gi\|77461042\|ref\|YP_350549.1\| type II secretion system protein [Pseudomonas fluorescens Pf0-1], gi\|77...	406.0	[0..3]	[402..10]
gi\|28868145, gi\|... - gi\|28868145\|ref\|NP_790764.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato ... tr\|Q888U1\|Q888U1... - Type IV pilus biogenesis protein PilC OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilC PE=...	406.0	[0..3]	[402..10]
gi\|66044052, gi\|... - gi\|66044052\|ref\|YP_233893.1\| type II secretion system protein [Pseudomonas syringae pv. syringae B72...	406.0	[0..3]	[402..10]
gi\|88701939, gi\|... - gi\|88704112\|ref\|ZP_01101827.1\| general secretory pathway protein F [gamma proteobacterium KT 71], gi...	405.0	[0..3]	[402..9]
gi\|34499282, gi\|... - gi\|34499282\|ref\|NP_903497.1\| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC...	405.0	[0..4]	[403..15]
gi\|71734826, gi\|... - gi\|71734826\|ref\|YP_273101.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseol...	404.0	[0..3]	[402..10]
gi\|110601063, gi... - gi\|222056454\|ref\|YP_002538816.1\| type II secretion system protein [Geobacter sp. FRC-32], gi\|2215657...	402.0	[0..1]	[404..1]
gi\|46560496 - gi\|46560496\|gb\|AAT00616.1\| type IV pilin [Myxococcus xanthus] gi\|108467391, gi... - gi\|108763511\|ref\|YP_633923.1\| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622], gi...	402.0	[0..2]	[403..17]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYQYRGRS GQGQAVTGQL DAASESAAAD MLLSRGIIPL EVKAAKVAKS FSLTQLFGSK  60
   61 VGLDELQIFT RQMYSLTRSG IPILRAIAGL SETAHSQRMK DALNDISEQL TAGRPLSSAM 120
  121 NQHPDVFDSL FVSMVHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLIAIG 180
  181 LAMVILNIMV IPKFAEMFSR FGAD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.0
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPWATKVLIG TSNLFVNYWP LMLVMLLGAI IGIRYWHHTE KGEKQWDKWK LHIPAVGSII  60
   61 ERSTLARYCR SFSMMLSAGV PMTQALSLVA DAVDNAYMHD KIVGMRRGIE SGESMLRVSN 120
  121 QSKLFTPLVL QMVAVGEETG QIDQLLNDAA DFYEGEVDYD LKNLTAKLEP ILIGIVAVIV 180
  181 LILALGIYLP MWDMLNVVKG GK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.481486
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits