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View Structure Prediction Details

Protein: gi|24375592, gi|...
Organism: Shewanella oneidensis MR-1
Length: 171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375592, gi|....

Description E-value Query
Range
Subject
Range
FMD3_NEIGO - Fimbrial protein MS11-D3A OS=Neisseria gonorrhoeae GN=pilE1 PE=3 SV=1
140.0 [0..4] [168..5]
gi|19110404 - gi|19110404|gb|AAL82805.1| class I pilin [Neisseria meningitidis]
134.0 [0..4] [155..5]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQQGFTLI ELVVVIIILG ILAVTAAPKF INLQGDARAS ALQGLKGAIQ GANSLVFSKA  60
   61 ALAGKEKGSQ PTFSLGDTGT IAILDGYMLA TKASLEAGMD ITFDAKADPQ PVTADWIIDP 120
  121 TAGTPGTAKI YQHGAPANCF LTYTEAKAAN TSTNPATPGE LPKYVITDSG C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 1ay2A
Description: STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle