YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375591, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375591, gi|....

Description	E-value	Query Range	Subject Range
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	123.0	[0..2]	[132..17]
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	123.0	[0..3]	[132..8]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	122.0	[0..2]	[132..17]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	121.0	[0..2]	[133..5]
gi\|134137346, gi... - gi\|67546892\|ref\|ZP_00424801.1\| General secretion pathway protein G [Burkholderia vietnamiensis G4], ...	121.0	[0..2]	[134..13]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	120.0	[0..2]	[134..14]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	120.0	[0..2]	[134..3]
gi\|77965462, gi\|... - gi\|78064717\|ref\|YP_367486.1\| general secretion pathway protein G [Burkholderia sp. 383], gi\|77965462...	120.0	[0..2]	[134..13]
gi\|88949148, gi\|... - gi\|88949148\|ref\|ZP_01151766.1\| General secretion pathway protein G [Halorhodospira halophila SL1], g...	120.0	[0..2]	[132..7]
gi\|7108555 - gi\|7108555\|gb\|AAF36472.1\| GspG [Burkholderia cenocepacia] gi\|198037901, gi... - gi\|206561859\|ref\|YP_002232624.1\| type II secretion system protein G [Burkholderia cenocepacia J2315]... gi\|7108555 - gi\|7108555\|gb\|AAF36472.1\|AF127982_2 GspG [Burkholderia cenocepacia]	120.0	[0..2]	[132..13]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQAGFTLV ELVTTIILIG ILSVTVLPRL FSQSSYSAFS LRNEFMAELR QVQQKALNNT  60
   61 DRCFRVAVST TGYQVSQFAS RNSAGCTGAA LAPNPLYTQA FQGGAQLVLT GNSANSFNLD 120
  121 FDINGRPSLA CNGSCIKVIA NDTLVINISS EGYIYAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits