YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375590, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375590, gi|....

Description	E-value	Query Range	Subject Range
gi\|78684226, gi\|... - gi\|78684226\|ref\|ZP_00849011.1\| MSHA pilin protein MshD [Shewanella sp. ANA-3], gi\|78507978\|gb\|EAP214...	260.0	[0..1]	[188..1]
gi\|82494955, gi\|... - gi\|82494955\|ref\|ZP_00880534.1\| MSHA pilin protein MshD [Shewanella sp. MR-4], gi\|82407199\|gb\|EAP4786...	254.0	[0..1]	[188..1]
gi\|37199873, gi\|... - gi\|37681122\|ref\|NP_935731.1\| MSHA pilin protein MshD [Vibrio vulnificus YJ016], gi\|37199873\|dbj\|BAC9...	252.0	[0..26]	[188..3]
gi\|27364830, gi\|... - gi\|27364830\|ref\|NP_760358.1\| MSHA pilin protein MshD [Vibrio vulnificus CMCP6], gi\|27360975\|gb\|AAO09...	251.0	[0..26]	[188..3]
gi\|113908884, gi... - gi\|160873636\|ref\|YP_001552952.1\| MSHA pilin protein MshD [Shewanella baltica OS195], gi\|160859158\|gb...	250.0	[0..1]	[188..1]
gi\|114045985, gi... - gi\|78688961\|ref\|ZP_00853627.1\| MSHA pilin protein MshD [Shewanella sp. MR-7], gi\|78511644\|gb\|EAP2500...	243.0	[0..1]	[188..1]
gi\|124510841, gi... - gi\|124545498\|ref\|ZP_01704691.1\| prepilin-type cleavage/methylation [Shewanella putrefaciens 200], gi... gi\|77811744, gi\|... - gi\|77813296\|ref\|ZP_00812574.1\| MSHA pilin protein MshD [Shewanella putrefaciens CN-32], gi\|77811744\|...	235.0	[0..1]	[188..1]
gi\|82741322, gi\|... - gi\|82741322\|ref\|ZP_00904046.1\| MSHA pilin protein MshD [Shewanella sp. W3-18-1], gi\|82721331\|gb\|EAP5...	235.0	[0..1]	[188..1]
gi\|68520313, gi\|... - gi\|68541926\|ref\|ZP_00581664.1\| MSHA pilin protein MshD [Shewanella baltica OS155], gi\|68520313\|gb\|EA...	234.0	[0..26]	[188..14]
gi\|54310362, gi\|... - gi\|54310362\|ref\|YP_131382.1\| pilin protein [Photobacterium profundum SS9], gi\|46914803\|emb\|CAG21580....	233.0	[0..26]	[188..11]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINPRLFSM KTSIDTSPNA AQNTIRQQGF TLIELVVGML VIAIAIVMLS SMLFPQADRA  60
   61 AKTLHRVKSA ELAHSVMNEV WGKRYDQNTN ANGGVPACGS PLGSSCSATL GPEAGEGRN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.92
Match:	1oqwA
Description:	Pilin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFNDVDDYHG LSQNDAMLNS SQTYAEAYPN YQLSVTVTYG AAPNTKLVTI NVTTPDNEVI  60
   61 TYNLVRSNY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits